RNA id: XM_021568932.2


Basic Information

Item Value
RNA id XM_021568932.2
length 2880
RNA type mRNA
GC content 0.45
exon number 13
gene id rbck1
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56461343 ~ 56473775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACGTACTTCCTGAATATAGCTAGCTAAGTTTCGTTTCACTTTTCATTCAGCTAGCCTTATAATCTTGATAATGAAGTAGCTACACGTAAAGAGAAGTGGTTTCAAGTTCTATAATTACGTAAAATTTTGTGGCAAGAGAAAGGTAAGTTAATTATCAACAGATTAGGAAACTCTATGAAGAAGCCTGATAGCCCTATTACGTAACTGCGCGCTGATCAGGTCTAACTATGACTTCTCCTGAGGTCTTCACAAGCAACTTAGTAGAGGCGGAGGAGCTAGCCCAGTTGTTGAGTGAGGCCATCAGCTGTGGTGACAAAGAGGAAGCCAAAAGGTGTTCAGAGCAGCTTGCAGAGTTGTGTGTACCAGTATCTGTCATTATCTCCCGCAAGGCTTACTCCCAAGACTCTATTCGGTTGAAGGTGGGAGTCGGGGATGCACAGTCAGAAAACTATATTCCGGTTACTTTGTTGGTAACACTTGACATGACCATTTCAGATCTGAAagaaaagATCAATACTGACTATGGATTTCATCCATCTCTGCAAAGCTGGGTGATCGGTAAGCGTCTGGCACGGGACTCTAAAACTCTGTACAGCCATGGGGTAAGGAAGAATGGAGACCAAGCCTACCTGTACATCAAGTCTGCCCAGGCTGCCAACCTCAGCCGGGAGCAAGTGAACCAGGAGGAGGAGCACCGTCGGCTAGACAGTATCATTGAGTCATTGAGTCCTCTACTGGCCAGAGGAGCAACTGGACCAACCCCACTTCCCAAAACTAAACAACCAGCACCTCCTCCTCTGCAACCAAAGCCTCCGGTGGGTTGGTCATGCTCTGTGTGCACCTATGCTAACAAGCCAACGAGGCCGGGCTGTGAGATGTGTGGGTCTGAAAGACCAGAAGATTATAAAGTACCTGAGGTTTACCAGCCTGATGAGCAGGAGATCCAGAGACTCCGGCTAGAGGAGATGGCCAATCTACAGTACCAGCAGGCATTGGATGAAGAGCGGGAGAGGAATTTCTTGAGTCTGGTGGAAACAGACGCCCACAGCCTCGTCCCCAACACAGAGGAGCTGGACTGTCCTATTTGCCTCTGCTCCATTCCGCCAGGGGAGGGAGCCACACTGCGGGAGTGCCTGCATGTTTTCTGCAGGGAGTGTCTTAAAGGAACCATAGTGAATAGCATGGATCCAGAGGTGACCTGCCCTTATGGGGATGAAGACTACAGCTGTGATAGAAAGCTGCAGGACAGGGAGATCCAATCTCTTCTTTCTCAGGAGGAGCACCAGAAGCTTCTAGAGCTGAGGCTCAGTATTGCTGAGACGCGGAGTGAGAACAGCTACCACTGCAAAACCCCCGACTGCGCTGGCTGGTGCATCTTTGAGGACGAAGTCAATGAGTTTATTTGTGAGCTCTGCAAAGAGACCAACTGCCTCCTCTGCAAGGCCATCCACAAAGACATGAACTGCAAGGAGTATCAAGATGATCTCCGGATCAGAGCTGAGAATGACGTGGCTGCAAAACAGACCACACAGATGCTGGAGTCCTTACTGCAGAACGGGGAGGCCATGCAATGTCCTAAGTGTAAGGTCATAGTTCAGAAGAAGGACGGCTGTGATTGGATCTGCTGCCTGATGTGTAAGACGGAGATCTGCTGGGTCACTAAGCAGGCTCGCTGGGGACCAAACGGTTCTGGGGACAACTCAGGAGGCTGTGGATGTCGATTCGATGGGGCGCGTTGTCACCCTAACTGCCAGAACTGCCACTGAGGGGCCCCACTCCATCTCAACATGGTGCTGGATGGGCAGTCCATATCGGGACACACTCAGTGTCCTGTGAGGCAAGGAGACTATTTTTCACTCCTCAGTAATCCTAACCTGGACTAACCTGAAAAGATCATGCACGGATGTCAAGGGGTGATTTGGGTAAAAACTTTAGTTCTGCACATGGATCAAGTTATTCAGTCCTTTGTGAAGACACTGGCTGGTCTTCCTTCCAAAGGCCTTTTATATTACTTTGAACACCAATTATCCCTGGGCGGTGTTTAATTGATGGTTCAATTGACGTTGGTGTATCACACATTTTATTACCTAGTTAGAGGAATAATATAAACGTTTTGCTCTATACATGTAGGACAATTGTTAAATATGTTAGAGGTGTATAACCACCTATATCTGACAGGGGACACTCCATTTAAACAAAACAGGGTTGTGAAATAAATTCAAGATGCTCATTGTTTTCTTTGAGATGCACGCTTCTGTTTTGTTAAATGGCAAGAGTCTTAGACACTGGAAGAATATTGTATATTGTCCTTCATGTAGAAAATAAATGTTGGCTAATTGTTTAACTCCTCATCAGCAGTAAGGTTCTAGTCATGACCTTAAAAGCATTAACACTAGAGATACTAAAACAGATACATATTGTAACCTTGTAATGGGGACAACTATTTACTTTTCTTTGGACTGAATGTGTACAACTGTAATTAAGGGATATTTAACATTCATTGGTTCTGTTAGATTTTGTAAGTTATCAAAAGGCAGTAATGAACAATCCCAATTCTTCTGTAGTTTGGTTTGACCACTCCTCCAGCCTTATTGGAAGTGTTTTTTTGAACACTCCCAGCAGAAGCCATCCATACTTTTTCGTTATTGATGACTACAACGAAACCGATCTGTTTCGGCGTAGCCAATTGTTTTAACACTGCATACAGTGCAGTATAATGCAAGTCTTAGCTATGTTCATTAGCTACTTTTTTGAAGGATGATACCATTGCAGGGCACAATTACTATTTTGTTTGGCGAATGTAAAGCATTATTTACTTTAGGGAAAAGAACAACTTTTCTTCATGAATGATCCAGAATAAAGGGGTTTTattgtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677476 lncRNA upstream 86617 56369855 ~ 56374726 (+) True LOC110494151
TU1677516 lncRNA upstream 118120 56343020 ~ 56343223 (+) True G1466632
TU1677515 lncRNA upstream 118801 56342327 ~ 56342542 (+) True G1466631
TU1677513 lncRNA upstream 119218 56341261 ~ 56342125 (+) True G1466630
TU1677478 lncRNA upstream 132270 56324591 ~ 56329073 (+) True LOC110494150
TU1677596 lncRNA downstream 7212 56480987 ~ 56483412 (+) True G1466702
TU1677606 lncRNA downstream 21079 56494854 ~ 56506137 (+) True G1466708
TU1677604 lncRNA downstream 59893 56533668 ~ 56536745 (+) True G1466707
TU1677652 lncRNA downstream 85738 56559513 ~ 56559838 (+) True G1466742
TU1677689 lncRNA downstream 170739 56644514 ~ 56644724 (+) True G1466775
XM_021568930.2 mRNA upstream 8966 56447092 ~ 56452377 (+) False LOC110494152
XM_036950229.1 mRNA upstream 8966 56447092 ~ 56452377 (+) True LOC110494152
XM_021568929.2 mRNA upstream 86618 56368032 ~ 56374725 (+) False LOC110494151
XR_005036703.1 mRNA upstream 132301 56324786 ~ 56329042 (+) False LOC110494150
XM_021568923.2 mRNA upstream 258491 56192761 ~ 56202852 (+) True zgc:109965
XM_036950240.1 mRNA downstream 79730 56553505 ~ 56556106 (+) True LOC110494158
LOC110494160 mRNA downstream 101962 56575737 ~ 56584088 (+) False LOC110494160
XM_021568951.2 mRNA downstream 111084 56584859 ~ 56591591 (+) False LOC110494159
XM_036950246.1 mRNA downstream 111089 56584864 ~ 56591591 (+) True LOC110494159
XM_021568958.2 mRNA downstream 124630 56598405 ~ 56617378 (+) False LOC110494162
TU1677057 other upstream 240397 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 333862 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 444730 56015577 ~ 56016613 (+) False G1466131
TU1676957 other upstream 444730 56015577 ~ 56016613 (+) True G1466131
TU1676946 other upstream 463169 55996648 ~ 55998174 (+) False G1466124
TU1677617 other downstream 106616 56580391 ~ 56582721 (+) True LOC110494160
TU1677978 other downstream 643927 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 672738 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 675528 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 1005022 57478797 ~ 57483589 (+) True G1467159

Expression Profile