RNA id: XM_021568971.2


Basic Information

Item Value
RNA id XM_021568971.2
length 3197
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110494166
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56650088 ~ 56667854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCAGCAACCAATACGGTTCGCCGGGGGAAGATAACTGCCAACGAATTCAGACGAGTTATGGGATTTAGCTGGTGTCAACAGCAGTCAGAAGTGAGAAAGATAACGATTGTACAGGAAAATAAAGCgattatataaatacatttaaggCATTTACAATAGGTTGTGTACAATAgctttttaaaaagtatgtatTTATCAAATCTCTTACATTGATGGAAACTTAGTTAACGGGACTGGATGGGACTTTAAAAAAAGAGTCGTCGAGGGATGAGACTTTCGATAAGGTAAAAAGTGAGATAACAATTACGATTGCTGATATAACTTTATTTGTAGATAATCTAGCCTATTACGAGGTTCAACAGATTGCGCGAAAACTGGATTCGGGTCACTCAGTGCGCGCAGGTCCCCTCTGCCAATTCAGCCATCGGACGATTTGAACGAGTCCTACGCCATGTCTCTGCCACGTATGCTGGGCGAGCTGCAGCTGTACCGGGTGCTGCAGAGGGCCAACCTGTTGGCCTACTACGACACCTTCATCCAGCAGGGCGGCGACGACTTGCAGCAGCTCTGTGaggctgcagaggatgagttcctGGAGATCATGGCGCTGGTCGGCATGGCGACCAAGCCACTGCACGTGCGCCGTCTACAGAAGGCCCTCCGCGACTGGGCAGCCAACCCGACCCTCTTCAACCAGCCCCTGGCCAACGTGCCCCTGGGCGGCATCCCGCTGTTCAAGGTGGATGGGACAGGTGCCTGCGGAACTGCCTCCAGCGGACCCAGGAAGTCCCTGAGCAATGGACAGCCAGGGTCGCCGTTCGACAGGGAGGACAGGGCGTGCCTCACCCCTATGCACAGCGGGAGCCCCAGAAGTCCCTGCTCCCAGGCCTCGCCACAGCCCCCGGACACCCACTACAGGGGCAAGCTGTCCCCAATGGACCCCCACTGGCTCAGCCCAGAGCCGGATGGGAACAGTGGCTCGGTCTCAGCCTCAGGGGTGGACGAGGAGCAGCCCAGCCCACCTCTAATCCCCCCTCGTACCCCAGGTCCCTCCACGcccccagcctcctcctcctccctctccccggTGGTCCTCTCAGCCTGGCCTGGGGGCCAGCTGGACGGGGAGACGACACAGGCAGTGGGGGAGAGCGTGGACAGGCTCCTGAGGACCCTGCCCAGGTCGGACTCCAGAGAGTTGAAGACACTCCTTAGGATGAACAAGAAGATGGCCAAGACGGTGGGCCACATCTTCAAGATGGCACCCCAGGACATGGCCAAGGAGGAGGAGATCCGCAAGTACAGCCTCATCTACGGCCGCTTCGACTCCAAGAGGAGGGAGGGCAAGCAGCTCACACACCACGAGCTGATCATCAATGAAGCGGCCGCCCAGTTCTGTATGCGTGACAACGCTCTGCTTCTGCGACGGGTAGAGCTCTTCTCATTGGCTAGACAGGTGGCAAGAGAATGCGCGTACACCTCCACACTCAAGCATGCCAGAACAAGTGCAGATGACTGCAGTTTATCATCCCAAAAGAGAGTGAAACATGAGGTGATAGTGTCAGAATGTGTGTCCTCTCTCCATGGTGTGGAGGGTTCAGAGGGCGTGTCCCAGAGGGCTGACGAGGACAGCTTATCAGGAGAGAGTCTGGACAGCTTAACACAAGACTTTGAGGtcaaggtggagaggaggggctcGATAGCAGTGTGCCGCAGCAGCAGCCCTGGCAGCACCAAAGATGACTCGGACCACAGGGGAAAGTAGTGAAACCAACCACTCATCATCCTGAGAACCCATCAACAACCCTGCCTCTCAGCTCCACTCGGATCTTGGAGGGCACAACTCAGCAGGCTTTCCATCTGTACTTAAACCATTGACACTTGGAAGTACTGGGGAGGGGAGGTGGAATGAATCATTCCAATCTAAATCAATTTTggatcccaaatgacacccaattccctaaatagtgcactacttttgatcagaactCTGGTCAGAagcagtgcattatatagggaatagggtattaTTTGGGACGGAGCCCATGACTGGCTGAATCGGGTGGTTCAGGGAGAGGTAAAACATCATAAACCTTCTAATACTATGGCCTTCCAGTACTGAAATTGAGGGATAGGCACTCTACAACTTTACCTCTGTATATAGTGTGCCCAAACACTCCTGCGGGGGCATTAGCCACATGCATCCACAGGGCTACGGTAACACTTACACAAATGTAGGAGGTATGTCACACACTGATGTGACAATATCTCAGTTTGCCCACTTTGAACATAATCCCAATCCCCATaatcccctcctcccccaccccgcCCCCAGGACAATGGATGCAAAATGTTGATATCATGACTAACTTTTGGTGCTATTTTCGTTCTGTTGATACAAGGTTGTCACTGAGATTAGGATAAGTATCTGTTATGACACTGCCGTTAAAGATTGGTTTTACAAAGTGTCACTAATTTGAGTGTTGACCGTTAGATGATAAATGCAATGTGTACAGAGAAGATAATCAGGTTCAGAGGCCTTTTTCTTCCAATACTGCAGCAACTGTCACTGACACCCACTGAAACTATGTTAATTTAGAGGGGTGGGTTTGGATGTTAATATGTTAACACTATTGAGCCCTTAGATTATATTTGTTGGTGAACTCAACATTCTTTGATTTAACTTAATAAGGCTTAAACAAGCAACAATAATTTGCATAACTCTTGAGGCAATTACTAAGTTAGCAATGACAAGAATGCTCATCTCCCGATGTTATTATTTTAATACAGTATGTATGTCGTATCAAACACTAAATTCTTTGATTATGACGTTTTGGAGAATTCACTTTTTTTGGTAAGAATACATAGATGTTACTGGGAATGAATGTTTAAAAGAAAGGTGTTTGGATGGTTAGGAAATCAGGGAGAATCCAGGACATTACATTTTCTGCATCTGAAAAGGtcccctatttcctatataatgcactacttctgAACAGGGCCTGCCTCTAGTCAAAgatggtgcactatataggaaaaagGGTGCAATTTGGATGGACACATTATTTCCATGAAGTACCAAAACTGTAACCTCCTGCCTCACAAGCATTAAACAACCTCCTCCGTTTGTTATGCTGAACAGCAGATTATTTATTTTGTTAAATCtcaataaatgttattttattgttttaaaa

Function

GO: NA

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677689 lncRNA upstream 5364 56644514 ~ 56644724 (+) True G1466775
TU1677652 lncRNA upstream 90250 56559513 ~ 56559838 (+) True G1466742
TU1677604 lncRNA upstream 113343 56533668 ~ 56536745 (+) True G1466707
TU1677606 lncRNA upstream 143951 56494854 ~ 56506137 (+) True G1466708
TU1677596 lncRNA upstream 166676 56480987 ~ 56483412 (+) True G1466702
TU1677706 lncRNA downstream 696 56668550 ~ 56671026 (+) False G1466787
TU1677710 lncRNA downstream 696 56668550 ~ 56671026 (+) False G1466787
TU1677714 lncRNA downstream 696 56668550 ~ 56671026 (+) False G1466787
TU1677715 lncRNA downstream 696 56668550 ~ 56671026 (+) True G1466787
TU1677757 lncRNA downstream 46701 56714555 ~ 56714779 (+) True G1466824
XM_021568960.2 mRNA upstream 21081 56622540 ~ 56629007 (+) True LOC110494163
XM_021568958.2 mRNA upstream 32710 56598405 ~ 56617378 (+) False LOC110494162
XM_021568959.2 mRNA upstream 32710 56609541 ~ 56617378 (+) True LOC110494162
XM_021568951.2 mRNA upstream 58497 56584859 ~ 56591591 (+) False LOC110494159
XR_005037020.1 mRNA downstream 32744 56700598 ~ 56722352 (+) False LOC118940478
XM_021568987.2 mRNA downstream 149003 56816857 ~ 56829761 (+) False si:ch73-190f16.2
XM_021568986.2 mRNA downstream 149436 56817290 ~ 56829761 (+) False si:ch73-190f16.2
XM_036950252.1 mRNA downstream 195580 56863434 ~ 56868723 (+) False LOC110494174
XM_021568990.2 mRNA downstream 195589 56863443 ~ 56871212 (+) True LOC110494174
TU1677617 other upstream 67367 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 429142 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 522607 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 633475 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 449848 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 478659 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 481449 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 810943 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 830528 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile