RNA id: XM_021568986.2


Basic Information

Item Value
RNA id XM_021568986.2
length 4323
RNA type mRNA
GC content 0.38
exon number 7
gene id si:ch73-190f16.2
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56816857 ~ 56831816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCAAATTGTAAAATCGTTGATAGACAGTTGACTCAACCTATCTTCGGTACGAGCAGTTTTCCTTCTCAGATAAAGGACCTATCACATGATTATCTCATGCGCGTCCCATATAATCCATGGTCATTGGACACAATTTTGATTGAAACTAAATTTGACCAACAGAATGCCCGCCACTACTGTACTGACGGTCACAAAAAAATGAACAGTAGctaggtttttattttattttttaacagtagctagctagctctttTACAAACAGGaaaacaatacttttttttttaactcacttGTTCCATGGCTTAAAATCCATTATACCGGACAAATCAGCTGTGGACGACTACACACTGTTGAGGGCTGCTTTGGTCCAGAGTTGACTTACACTTTTGGATGCATGACGAGGATCTGAAAGATGACGACCGAGACCCACGTCAAGGACATCAAGCCAGGACTCAAGAATCTCAGTGTCATCTTCATCGTACTTGAAACAGGACGAGTGACAAAGACAAAGGATGGGTATGAGGTGCGGACCTGTAAGGTGGCCGACAAGACCGGCAGCATTAGCATCTCAGTTTGGGATGAGGTAGGGGGACTGATCCAAACCGGTGACATCATCAGACTCACTAAGGGATATGCGTCTGTGTTCAAAGGTTGCCTGACTCTGTacacaggtagaggtggagagctGTCGAAGATTGGAGAGTTCTGCATGGTGTATTCAGAGGTGCCAAACTTCAGTGAGCCTAACCCAGAGTACTCTAACATGGACCAGATGAAGAACAAGACTGTAGTCGGTGACCAAGGAAACATActgaacaacaacaataacagctCAGCTGGTAATGAAACTACCAATGGGAACGGTGTAAACTCTCAAGGTTCCGGGAGCTCGACTAATCCTCAACAGGGAGGGCGGGCTGGCAGTGATGTTGGCAGCAGAGCAGCCAATCCAGGAGCAGGAGGGACAGCTGTCAGCAATGGAAAGGAGACTAGACGTTCAGCAAAAAGATGATTGGAGCAGAAGGAAGCAAAGTCCATCCCTCTCCAGAAATGTCAAATGATGAGACTAATGCTGCGTTCGAAGTGGAAATTTACCACCATAGAGTTAGGACTCTAAATGGATAAAACCCATTTTGGCATGAACCTTGCTATTGAGGGcttcaccattttaaagtagtcaaatgggtgggacttcctatgggtaAGGAAGCATCACGAGGGATGATAGTCAAGTTTTTCACTAGTAATTACCAGCTGGAGGGCtgttcaaatgtatttttccagTCGTATGTGGAAAACGTTaagacatttgatttgaattaggtTTGTTTACACAGAACAGAGTTCACTAAAGGTTATGTAACCATCAAGAAAAAGTATTTGTGAGAAAAAtaattattttcattttttacaaTTAAGCTGCCAAATGGGAAGCCATAACGTGTTTTTCAAAGTCAGGTAGTTTTCCAATGAGAtatctaaaatataaaattacTCTTTTAACTAATGTGCTGTGTAGGCTCTGTGCAAAACGTAGCCCAAACCTGACAGATTGATGTGAAGTTGGATTCAgaaatccttagttgctacatccatttttggatgtATAAATAAATATAGATTGATGAatttaacttataaatgcctcatgagcttaggtCAACTGTCATACCTCATCAGATTCAGAACCTTGCGACAGCagccacactttacatgttgtacGACCGTTCAAACTGGTCTGGAATAGTGAGCTTACATGACaatttttactccaatgtttgtaaacaaactgTATAGCCTCGTAACATGGTTGAAACTACATATTtggtatcatggatggtcagtccttgcatccatagatcTGTTTATTAATTTGAAAGTGGTTACACTTCTCCAGCCCCagatagagagaaaaaaaaaaaagtttcaattaaggattctggCTTGAAAATGTAAATTAAAGAAAACACAAAGTATATAGATATTAAGCAATAGCAATTTATTTAAACATAACCAATCCTAAACCACAACACTGAATGACAAGACTCAAATGCTGTAGCATACATTGTATAAAATCGATCAGGTTTCAATGCCTTGGTTTGTTAAGTTTCTCCTGTAATGTCAGAAAGGTCAATGCAGATTACTGTTTCACTAAAATCATTAAATCATGTATTTTATACATTTTCGGAACATTTTGTAAGAAATAACCATTCAGTAGCACACAATTATATAACAAGGCAAAGTGCTTTCAAGGATTGCAATGTCAAAATAATGAACACGTTGGAGATTTGTTCAGGGTTGGAAgggtatttatgtgtgtgtgtgtttgtgtcttttaCGGAATAGATCTCTAACCCCTATTACTGTATCTCACATACCTATGCTTCAGTCAAAAAGTCAAAGGTCAGTTGGTTGGGAGAGGTGATGGGAGTTGTGGTGGTAGCATGATCACAAATTAAGGTCTAGATTTGTTTTTCGTTTGAAGGCTTAAGGCTGGATGCAATACGATTTCCCATCACACAAACACCACATGCGACATATATCCATAATTTGACTTCAATAACAGCTTTAGTTATGTTGCTTTTGTAATTAAGATGCACACACGTTCTCCTAATCTCTGGTAGTTGTAGACACAGTTGCAGCTGTAAACTAGACTTTTAGACGTATGGCTCAACTTACACACAGTAAAAACCCACCATACTATGAAAAACAGGATGATACCTGGTGGATACTTTCAGGACGgggttttaaaaaaaacaatcataaaGTACCTTGTTGCAACAAGTATCTGAAGGATAGAAAACATGTACCAGAGACGAGGTTCACATGTATGCTACAACAGTTAGACCTTAAAAGAGATTTCATTTGATCAAAATACAGTTTGGCTTCACATTCCAGTGGTTGTTGGGATATCATTTTTCTTTCCATGTTCAAGcgcacgtacaaacacacacacacacacacaaaatcaagctcacttttttttttttttttgagcaaAAGTGATTAATATGCTTTCATATTTTACAGACACTAGTATACAGTGAGctacaaaagtattgggacagtgaaaaccgttttggctctgtactccagcactttggatttgatacaatgactatgaggttaaagttcagactgtcagctttacctttagggtattttcatccatatcgggtgaaccgtttcaATATTACAGCACTTTCTGTACATAGTCCCTCccaaatgtgtcactgtcacaCTACTTTTGTAGCTCACTGTAGGTGGTTATGAGCTAAGGAGACAAAGAGTAGCTGTGCATCAAGGAGGTAGGCAAAATAAAACATGATCATATTACATTAGCAGTAAAAGTAACTTTCAAAATAGCATGGACATTTGAGGTGAGACCATTTGTTTTAACTTAAATGTATTAATTGTAACTGATATAATTTGAGGTAATATggattcaaaaaaaaaaataatcacacAATCTCATGCTAATAAAacttataaaataaatgtttactgAATGCTCTAGAAAATACTGAATGCAGGCATGCTCAAGCTCTTCACCAGGCAGCAGTACTTCAAAACAGAAAGGTGCCAAAGAGAAAGCATTTCATGCATTTCCACTTGATCATTTTGCACCTCCTAATTTATAGTTTGGCCTAAATGAAGCACAATAACACTTTCCTGATCACCTACAGTTCATGCTGAAGTCACATGGGAAGTCAACATCGGCTTGGCATATTCTATCCCTTCTATGGACTACAACCAGATAGGGACTATTAGTGGTTAAAATACCTGCCTAACGTTCAACTTTATGACCAATTACTAACTTTAACCCAAAACTTCCAATATGGTGAAAACAATTGCAGCGAAACAAGAAGCCAATGAAATTCTAGCAGAGGCAATACGGACAGTCAAAGCACATAATAATTCAAGGTTGTAGCCCGTAGACCGGGCTTGTGTTACATTTTGCTTGGCTGGTCTATTGGAGTAAACAAATCCTAGCATAATACAAAGCAATGTTCAATGACTGAGTCAAACCGAGACGCCCTCCTGAATAAGACGTTAATATATCCAGAACCAAAGTAAAAATAAGGGCTGTTAAAGCAAAGGACTACCAACCTCAAGCTTTCAATTACACCAGTGCTTTACATTTCATTCAAAAGGTCTGTTAATGCATATTAGGTCTACCCCACATAGCACGTAGGATACTGTActcatttattttcaaatatgcTCAAATTAACAATAACATTTAAAATGAGTCAACCAAAAACTATTACAGGCCATTGCACCAGAATCTTACATACATCACTTGTGTTTCAAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677801 lncRNA upstream 26211 56787434 ~ 56791079 (+) True G1466863
TU1677788 lncRNA upstream 45051 56768731 ~ 56772239 (+) True G1466850
TU1677783 lncRNA upstream 51359 56765201 ~ 56765931 (+) True G1466848
TU1677768 lncRNA upstream 79537 56737350 ~ 56737753 (+) True G1466835
TU1677766 lncRNA upstream 81940 56735130 ~ 56735350 (+) True G1466833
TU1677886 lncRNA downstream 139563 56969324 ~ 56972726 (+) True G1466939
TU1677837 lncRNA downstream 195027 57024788 ~ 57026913 (+) True inavab
TU1677950 lncRNA downstream 233156 57062917 ~ 57063155 (+) True G1466997
TU1677951 lncRNA downstream 234220 57063981 ~ 57064182 (+) True G1466998
TU1677952 lncRNA downstream 234788 57064549 ~ 57064897 (+) True G1466999
XR_005037020.1 mRNA upstream 94938 56700598 ~ 56722352 (+) False LOC118940478
XM_021568968.2 mRNA upstream 149436 56650088 ~ 56667854 (+) False LOC110494166
XM_021568971.2 mRNA upstream 149436 56650088 ~ 56667854 (+) True LOC110494166
XM_021568969.2 mRNA upstream 150827 56650088 ~ 56666463 (+) False LOC110494166
XM_036950252.1 mRNA downstream 33673 56863434 ~ 56868723 (+) False LOC110494174
XM_021568990.2 mRNA downstream 33682 56863443 ~ 56871212 (+) True LOC110494174
XM_021568996.2 mRNA downstream 91934 56921695 ~ 56966874 (+) True syt6b
XM_021567497.2 mRNA downstream 143661 56973422 ~ 56975836 (+) True LOC110493225
XM_021568999.2 mRNA downstream 148801 56978562 ~ 57026958 (+) False inavab
TU1677617 other upstream 234569 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 596344 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 689809 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 800677 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 287941 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 316752 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 319542 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 649036 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 668621 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile