RNA id: XM_036950252.1


Basic Information

Item Value
RNA id XM_036950252.1
length 2043
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110494174
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56863434 ~ 56871212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTATGAGTCTCGAACTTGGTTAACAAAAAATTTAATTGCGAATTTACGACGTGAAGCTTATTTGATCGAACATAAGTTTCGTAATGTTTAGGTTTTTACGAACGTACCGATATAAAAGTGGACGCGCATGGCATTCCGACAATGTTATATGAGAGTTGTGTTTCTTGTTCAAGCGCGTAATGTTCCCACCTTCCTTCCGCCTTTgcggacatgtatttccattgttagagggGTCAATCGACTATCTTTTCAATATAATAGATCCTACTTGCCACCAGTTGACCTGTCCGGATAAAGTAATAATAAAGGAAGAAGATGGCAGACGAAACGTtatgtagctagcttgctaaacaGTTATGGCAGTTTATTCGATTGAGGCTAGAAAGCGATAAATGACATTTCTGAAATGTTAGTtaggtagctaacgttaacttGTGACTGACTACCTGGCTAGTtaccgctagctagctagctagctaacattgtccTGTTACAAACTACTTATTTAATTAGTTAGACATTTTACATTCTGAATTAACGTTACTAATTATACGTAAATGTGTATAGCATCAGCCAGTTAGCGTTCTAGTAGCGACCATCTCATAGCTTGGCTGTGTAGCGTGAGCTAGCTAGGTTAGGTAATTTGCTAGGTTAGATTGTTGTTGCCAGTCACTGTCTTATAAAATAACAAATGGCTGGGTTGGCGACTGTGACCACCCTTCGATTGCCTATAGGCATACGGACATTCAGTGAGTTGCGAGATGTCTCTGCATTTGGCAAAAACCGGTTGAATACAGTGTTGGGGCCAAGAATACGGATTAAACAGCCAATCAGATATATGACATCTTGTGGCATCCTTATGACCAGAACCCCCAGGATTTTTATCCATTTGGACAGGAGGACAACTATCATTCCCCCCAGCAGAACCTTCCTTAGTCTGGCCAACAAGAGGAAACAGTATTCAGAACGAAGAATCATTGGTTACTCGATGCAGGAGATGTATGATGTGGTGGCCAACGTGGACGATTATAAGCACTTTGTTCCGTGGTGTAAGAAATCTCAGTTCATCATGCAGAGAGCCAGCCATGCTAAAGCCAAACTAGAAGTGGGTTTCCCCCCTATAGTCGAGAGATACACCTCCATGATCACCAATGTGCGCCCTCATCTAGTCAAGGCTGTATGCACAGATGGTAAACTGTTCAACCACTTGGAGACAATATGGCGTTTCAGCCCTGGAATACCTGGTTATCCCAGAACCTGTACTGTTGATTTCTCTgcctactcatcttgttggctgacgaaaagtaaatgtgaacaaatatgcacctcggaattggataaggatgtGCGCAGTTGTGTCCCCGacgtgtctgtcttcacttgtagcctgtgagaaagacccgatcacctGAGTGAGACGCGCTTCGGATTGCAcagcacactcagggagaagggcacaacgcatCATTCCGGCCTggaaaaggcatggattttttgaGGGTGCATTATGGCCACAAAGGGGACCGTGAAATTTGAgtcattatcaagtgcttgtcaaattgtgaatgagaggatgttgaagtgtgtacagcctgcgcaaaaaaaaacAACGCAGAGCACATGCCTTTCAAGTgactttttttcaaatcatcattctCATGCAGCCTTActatgtattaaaaatcaaaacatacagcccaatgtttgtagaacttaagttacattaataactctaaattaagcatgtagcaatacctatttctttgttaaccgctcaacacagaataatGTGCGCACTCCATTGTTTTGAGAAAATATTTATGTTCAATtctattcttcatactataaaataaagcCACAGAATTATAAGCAAATCTGGTCTGCTAAATGAattagtgtagcccacagccagaTCAGGCCCTAACATAAGggcaactcagagtatgctattattttcttctgaaataaactacattttcttcatatcatgcttctttagacctgtctaaaataaatcatggatttattgtgaaggtgtagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677725 lncRNA upstream 31618 56829387 ~ 56831816 (+) False si:ch73-190f16.2
TU1677726 lncRNA upstream 31618 56829387 ~ 56831816 (+) True si:ch73-190f16.2
TU1677724 lncRNA upstream 35096 56817475 ~ 56828338 (+) False si:ch73-190f16.2
TU1677801 lncRNA upstream 72355 56787434 ~ 56791079 (+) True G1466863
TU1677788 lncRNA upstream 91195 56768731 ~ 56772239 (+) True G1466850
TU1677886 lncRNA downstream 100601 56969324 ~ 56972726 (+) True G1466939
TU1677837 lncRNA downstream 156065 57024788 ~ 57026913 (+) True inavab
TU1677950 lncRNA downstream 194194 57062917 ~ 57063155 (+) True G1466997
TU1677951 lncRNA downstream 195258 57063981 ~ 57064182 (+) True G1466998
TU1677952 lncRNA downstream 195826 57064549 ~ 57064897 (+) True G1466999
XM_021568987.2 mRNA upstream 33673 56816857 ~ 56829761 (+) False si:ch73-190f16.2
XM_021568986.2 mRNA upstream 33673 56817290 ~ 56829761 (+) False si:ch73-190f16.2
XR_005037020.1 mRNA upstream 141082 56700598 ~ 56722352 (+) False LOC118940478
XM_021568968.2 mRNA upstream 195580 56650088 ~ 56667854 (+) False LOC110494166
XM_021568971.2 mRNA upstream 195580 56650088 ~ 56667854 (+) True LOC110494166
XM_021568996.2 mRNA downstream 52972 56921695 ~ 56966874 (+) True syt6b
XM_021567497.2 mRNA downstream 104699 56973422 ~ 56975836 (+) True LOC110493225
XM_021568999.2 mRNA downstream 109839 56978562 ~ 57026958 (+) False inavab
XM_036950254.1 mRNA downstream 109839 56978562 ~ 57026958 (+) False inavab
XM_021568998.2 mRNA downstream 142318 57011041 ~ 57026958 (+) False inavab
TU1677617 other upstream 280713 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 642488 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 735953 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 846821 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 248979 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 277790 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 280580 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 610074 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 629659 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile