RNA id: XM_036948422.1


Basic Information

Item Value
RNA id XM_036948422.1
length 2804
RNA type mRNA
GC content 0.48
exon number 23
gene id LOC110493224
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56900273 ~ 56920774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATCGCCAGCACTCAGCAAAACATGCCCTCTGACATGAATGGTGTGGCTTACCATGGTCCTCCACGTAACTGGAGAGGCATTGGGATAGCTTTGATGGTGATCCTGATGAtcatttcactggtcatcctgTCTGTCATCATGCTCACTCCTGATGATTCTCTTCTTCTCCAGCGCTCCTGTCTTACTCTGGAGGACCTGGACAAAGACAATTTCAAAGTTCATGACGCCCATGTGACCTGGCTCAACGATGATGAGGTGGCCTTTCGCACCAGGGAAGGGCACATCCTGAAACACAGCCTGAGTGAGAACCTCACCATCGCTCTGCTGGGTGGCAGCATCCTAAATCTGAATGACACAAAGTTTCAAGTGTCACCAGACCAGAAGTATATTCTGCTGGCGTACAACTTGCATCTGGTGTTCTCAAAATCATTTTCAGCTTCCTATGTAATTTACAGTGTGGGGACAGGGGAATTTCTTGAGCTAAACCCACACAGAGTGAAGCCATCTGCTCTTCAATATGCCGCATGGGGTCCCCATGGAAATCATTTGATCTACATCTTTCAGAATAACCTCTACTACCAGCCTGGTGTGTACAGTGGTCCTGTGCGTCTCAGCACTACAGGCAGTGGGTCTGTTATCAACGGGCTGTCAGACTGGACATATGAGGAAGAGATCCTCCAGACGTACCCTGCCTACTGGTGGTCTGGAGACGGGGTACGGCTGGCGTACCTGTccatcaacaacacacacacaccctatgtgGAGATCCCTCGTTTTACTGGAGGGCCATACCCCACAGGAGCCTACTATCCATACCCTAAGGCAGGAGATAATATCCCTGCAGTTACTCTTTACGTGGTGAACGTCTTCAGCCCTGCTCACACTCTGAGGATGACTGCTCCAGTCTCATTCAAAAACAGAGGTCATTACATCTCCATGGTGAAATGGACCAGTGGGACCAGGCTGGCTGTGCGTTGGTTGAACCGGGTCCAGAaccagtctgttctctctgtgtgcgAGGCCACCACTGGTATCTGCTCACAGGAGGCGCCCCTCTTCTCTAGAGACGGCTCCATGTTCTATGTCACTCTGCCTGCGGCACAAGGGGGTCATGGAGAGTATCGACACATAGCTGTCCTCCCTACTCAGGTCAGAGTTGCGTTTCAGCCTTATCTACCTTGCTTTATCTTATTTGGCCCAAGCCACTGGGATGTGATGTCACTCAGTGGCCTGGATGAAGACGCAGAGAAAATATACTTCATCAGCACAGAGGCATCCAAACACAGCAGACACCTTTACAGACACTGTCTTACCTGCACACTCTCAGAGACCTGCCGCTTCTACAAGCCACAGTTCAACCCCAGCCTCACTCGCGTTATCCTCCACTGCTTggGGTACAAGGTTCTGGAAGACAACAAGCCTCTGTCTGAGGCCCTGAAGGGCAAACGGCTCCCCATCACACACTACAGCACCATTACAGCTGACCACTATGATATGCATCTAAAGCTGGGTCTACCACAGGGGTATGAAGAAGGCCTACATCCTCTCCTCATCATCGTGGATGGAGCCCCTGACACTCAGGCAGTCACAGACCGTTTCTCTCTGGGCTGGCCCCAGGTCCTCTCCAGTATCCACAGTGTAGCTCTGGCCTGGGTGGACGGCAAAAGTGGGGCGGCACACGGCCTGAGGTCACCTAACCTTGACCCCAGGAAACTCAGCTCCCAGAGAGTCAAAGACCTGCTGAGCGTAGTAGAATATCTGTCACTAACTACaaaaacaatttcagaacaatctgagattgTGGTTGTCgaaatcctctttcttgtgctttttgaggtggaaagACCCCAATGTATTCTTTGCTACAGGTGGTTGTTGGAGTTGCCGTACATTGATAACAGAAGAATTGCACTGTATGGAAAGGCATTTGGTGGACTTCTGACACTGAAGATGATGGCAGCAGCCAACATATTTAAATGTGCTGCAGTGATGGCTCCAATCACAGACTTCAAAATCTACAATGCTGCTTTCTCTGAGAGACACTTGGGTCTTCCAACCACTCAGGAGAGCTTCTACAAGGATGCCTCTTTGCTGGATGATGTGGTCAATCTGAGGGACAAGAACTTCCTCCTTTTACATGGAACCGCAGATGCACATGTCCACTTCCAGCACACTGCCGAGCTCATAGACCGTCTGGTGTCAGCAAAGGCCAACTACTCTCTGCAGATTTACCCTGACGAGGGCCACGTTTTGAGACGGAGCCACAGTGATCAGCACTTCCGGCGCACCCTAACAAACTTTCTCCAGGACTGTCTGGCTCCTATGCCCCCTCAAAAGTCTGATGGACAGGAGGATGACTGAGAGCTACCCTCCCAAACATTTACATCCAACAACAAAACACCAGAACACCATACTTCCATCCTTTTGACCTTGAGGACCTTGAGGATTTTGCATGAGGGAAATGTGAAAAGGCATGTAGTGTGAAGGGAAAGCATGCTCTCAAATGTCTCATGTTGAGTAGAGTTTGCATTTTTGTATTTAAATGGCTGACTAAACTCAACTCCATGGTGAAGGAAGTTAAACTTCCTTGGAGTTTAGTCATCTAGTATTTAGCATGACCCATATTGCAGAACCTGATTATTGCAAAGATccttaagaatttgttcttgttTCCTAAGTGCATTTGAGATGGTAATAAATCATTTGATGTTATCTGGTGGTGATAGTTTGTTTAAATCAAATcgaataaaattttatttgtcacatgcttcgtaaacaacaggtgtagactaacagtgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1678687 lncRNA downstream 27292 56827756 ~ 56872981 (-) False LOC110494175
TU1678686 lncRNA downstream 27292 56870865 ~ 56872981 (-) True LOC110494175
TU1678685 lncRNA downstream 70883 56827756 ~ 56829390 (-) False LOC110494175
TU1678667 lncRNA downstream 101641 56770049 ~ 56798632 (-) True G1467620
TU1678653 lncRNA downstream 147875 56747850 ~ 56752398 (-) True LOC110494170
TU1678846 lncRNA upstream 107730 57028504 ~ 57028975 (-) True G1467785
TU1678770 lncRNA upstream 190354 57111128 ~ 57111974 (-) True G1467714
TU1678885 lncRNA upstream 226537 57147311 ~ 57148712 (-) True G1467816
TU1678892 lncRNA upstream 240876 57161650 ~ 57161886 (-) True G1467823
TU1678899 lncRNA upstream 252774 57173548 ~ 57173797 (-) True G1467830
XM_021568992.2 mRNA downstream 10561 56886866 ~ 56889712 (-) True LOC110494176
XM_036950253.1 mRNA downstream 10622 56886866 ~ 56889651 (-) False LOC110494176
XM_021568994.2 mRNA downstream 10629 56886866 ~ 56889644 (-) False LOC110494176
XR_005037021.1 mRNA downstream 16857 56871314 ~ 56883416 (-) False LOC110494175
XM_036950249.1 mRNA downstream 39012 56836140 ~ 56861261 (-) False LOC110494173
XM_021568997.2 mRNA upstream 46168 56966942 ~ 56972632 (-) True olfml3b
NM_001124495.1 mRNA upstream 192232 57113006 ~ 57116710 (-) True cathy
LOC110493226 mRNA upstream 200669 57121443 ~ 57122707 (-) True LOC110493226
XM_021569013.2 mRNA upstream 212223 57132997 ~ 57145294 (-) False stx16
XM_021569011.2 mRNA upstream 212223 57132997 ~ 57145295 (-) False stx16
TU1678489 other downstream 399948 56494856 ~ 56500325 (-) False elmo2
TU1678487 other downstream 400073 56494856 ~ 56500200 (-) False elmo2
TU1678490 other downstream 400138 56494856 ~ 56500135 (-) True elmo2
TU1677371 other downstream 732936 56162860 ~ 56167337 (-) True dnai1.2
TU1677293 other downstream 929559 55954473 ~ 55970714 (-) True LOC110494137
TU1678904 other upstream 308733 57229507 ~ 57232707 (-) False hig1a
TU1678906 other upstream 308733 57229507 ~ 57232707 (-) True hig1a
TU1682225 other upstream 2753767 59674541 ~ 59676694 (-) True G1470802
TU1682385 other upstream 3070201 59990975 ~ 59996326 (-) False LOC110494253
TU1682386 other upstream 3070201 59990975 ~ 59996326 (-) True LOC110494253

Expression Profile

XM_036948422.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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XM_036948422.1 Expression in each Bioproject

Bar chart with 19 bars.
XM_036948422.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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