RNA id: XM_021567497.2


Basic Information

Item Value
RNA id XM_021567497.2
length 2415
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110493225
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56973422 ~ 56975836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGCAAGTACCATTTTGATATTCTAAAGCAAGTATTTTCTCATAATGCAAGTACAACAGTTTAGTGTTTGCTGTTTTCACACGTGACACACGAGAGACTGTATGAATAGTCTATAGTTGATGTTCAATGTCATGTCTAGGTTCAATTTAATGATTGAAATGACTAATTCACTCAGTGGATTTGTTTTGTAATATGTACAAGATCATAATTCCAGCAGGCCTACCTACATCAGCCCCGTGAATACCATAACCACATCCTGCCCCTTtcaaatgtttttattgtttCATCTGCTACTAGAAGTCAGTCTTAAGCTGTTTTTGAATATTTTGTTCAAGTGCATTACCCAGATTGTATATGTACTTTTTCTTTTGATATGTTTTTATGTTTCTTCTTGCTGTACTTTTTGCCTGCATGTCTAAAGTGTTTCTATTTGAACTGATATGCAAATATACTATATTATAAAAATCCTCATTAGAAATAGTTGTAGTAATTTCTGTCAGAATATGCCAGATAGAGAAGTAGAAAACATGCCAATGGTGCTAGAGATGACAGAAGAAAATAGGACCTGGCAGTTTGTCTGTGGTTTTTAAGAACGTGACGCAAGATAGTTTGTCTAGAAGTATTGAGCTTGCCAGCCAGACACACAAAGCGCAAGCAGCTGAGAGACTTAACTTTGATCACAAAATGGAGACGTATGACACCAACAGGTACTTCTACAGCGATGACATGCTGTACAATGTCAGCTACGATCTAACCTACCTTGGGGAGCGCTCCAGCTCCAGTCTTCCCTATTCTCACATCTACCTGCCACTGCTGTATTTCCTCATGTTTTTCACAGGCTTCCTGGGCAACCTCTTTGTGATCACAGTCATGGGCAGccgggggaagagaggtggccgtCTGGTGGATACGTTTGTGGTTAACCTGGCACTTGCGGACCTGGTGTTTGTCCTCACCCTCCCTCTGTGGGCCGTCTCGTCCAGTCAGGAGGGACACTGGCCTTTCGGCAACCTTCTCTGCAAGCTGAGCAGCTACATTGTTGCCGTCAACCGCTTCTCCAACATCTTCTTCCTGACCTGCATGAGCGTGGACCGCTACCTGGCCGTGGTGGGACTCATGGACTCCCGCTTTCTCCGCAGCAGCCAGTGTGTGCGTCTCAACTGCGCCGTGGTCTGGCTGCTGTCCCTGGCTCTAGGTACCCCCTCCCTGGTGTACCGTAGCATGTATACTCCCAACGGCAAACTCTTCTGTCTGGAGGATGAAGAGTCATCCTTCTTCCTGGGTCTGAGCCTGACCATGGTCTTCCTGACCTTCGCCCTGCCGGTGCTCATCATCATCCTCTGCTACGGTTCTATCCTGGCCCACCTGCGCCAACACTGTGTTTCTGCTGGCAACCCTCGCGCAGAAGCCCGACGCCGCCACTCTCTCAAGATGGTCTTCACCATAATCGTGGCCTTTGTGGTGTCTTGGCTTCCCTTCAACATCTTCAAGACCATCCTCATTGGTTTCAGGCTGTCTAGGGCCGATCTGAGCATTGAGACACAGTCTGTCTTGAGTCAGGGCCTCACCCTCTCCTGCTGCTTGGCCTTCCTCAACAGCTGCATAAACCCAGCCATCTACCTGTTCCTGGACCACCACTTCAGAGGGCAGGCGGAGAACCAGTTCCTGAGCTGCGTGGGAAAGCTTGGGCTACACCAAGGCTATGCCTCGTCCACTGACTTCTACAACGGTACCTCAGAGAGCTGCGGCACAACAGCCTCCAGAACTCGTCTCCAGCCACTTGACCAGAATGTCTGATAGCAGGGTTCTGCACCTTTTACAGCCTCTTTGCGGTCCGAAACGCTAAAGGTTGAGGTGAATCATTTTGTGTTATGATTTTAGGTGTTATGTAATTCAAGCTCAGTGAAAGCATTCtctgaaatatattttgtgtATATTATAGCTTCTCAAAATAAGTTATATTTTACATATCATAATTGCATATTTGATTATCATTGATATTTGAATTTAGGTTTTATTTATTCGCACCAAAGAAAATATTTGAAAGACGAAACAGTACAGATAAAAAACTGGTCAAAACAGTGTGCAAGTGAGGTTGATTAATTTAgctttcgtttttttttttacgacCAAATTAAATAGGATGGTCTTTTTATGTCTAAATATTTTGTATATGAATAATTCATGAGTAGCCTGGTTATTACGATTGTTGACATTCTTAAATTCATAGTAATATTAAATTGCAATTTGTTAACAGTAACGTTAATTTGTTAATGGTTCCTTTTTGCTGCGTGAAATTCATTACAACAATATTCAAAATGGTTGTCTATGTTCATGGCATTAGTAAGATTACATTTAATGTATTATAAAACATGTATAATAAACAGTTTTTTGTAATAAATGAAGTGTTCAT

Function

GO: NA

KEGG:

id description
K08405 GPR25; G protein-coupled receptor 25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677886 lncRNA upstream 696 56969324 ~ 56972726 (+) True G1466939
TU1677725 lncRNA upstream 141606 56829387 ~ 56831816 (+) False si:ch73-190f16.2
TU1677726 lncRNA upstream 141606 56829387 ~ 56831816 (+) True si:ch73-190f16.2
TU1677724 lncRNA upstream 145084 56817475 ~ 56828338 (+) False si:ch73-190f16.2
TU1677801 lncRNA upstream 182343 56787434 ~ 56791079 (+) True G1466863
TU1677837 lncRNA downstream 48952 57024788 ~ 57026913 (+) True inavab
TU1677950 lncRNA downstream 87081 57062917 ~ 57063155 (+) True G1466997
TU1677951 lncRNA downstream 88145 57063981 ~ 57064182 (+) True G1466998
TU1677952 lncRNA downstream 88713 57064549 ~ 57064897 (+) True G1466999
TU1677965 lncRNA downstream 92017 57067853 ~ 57068261 (+) True G1467007
XM_021568996.2 mRNA upstream 6548 56921695 ~ 56966874 (+) True syt6b
XM_021568990.2 mRNA upstream 102210 56863443 ~ 56871212 (+) True LOC110494174
XM_036950252.1 mRNA upstream 104699 56863434 ~ 56868723 (+) False LOC110494174
XM_021568987.2 mRNA upstream 143661 56816857 ~ 56829761 (+) False si:ch73-190f16.2
XM_021568986.2 mRNA upstream 143661 56817290 ~ 56829761 (+) False si:ch73-190f16.2
XM_021568999.2 mRNA downstream 2726 56978562 ~ 57026958 (+) False inavab
XM_036950254.1 mRNA downstream 2726 56978562 ~ 57026958 (+) False inavab
XM_021568998.2 mRNA downstream 35205 57011041 ~ 57026958 (+) False inavab
XM_021569001.2 mRNA downstream 54310 57030146 ~ 57042111 (+) False LOC110494181
XM_021569002.2 mRNA downstream 54311 57030147 ~ 57042250 (+) True LOC110494181
TU1677617 other upstream 390701 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 752476 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 845941 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 956809 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 141866 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 170677 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 173467 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 502961 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 522546 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile