RNA id: XM_036950254.1


Basic Information

Item Value
RNA id XM_036950254.1
length 2524
RNA type mRNA
GC content 0.53
exon number 10
gene id inavab
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56978562 ~ 57026958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCCCATTCCCGTTGCGACGTCCCTCTTCAGAGTACGTAAGAAGCAATACTTCTACAACTTCTGGAAAACGTGGATGAATGTTGATATGGACATGCAAATAAATTGTACTACGCCCTACACAATTGGATATTTGACATTTTGCATAAGAAGGGCATCGTGAAACTAGACATTTTCCTGTTCCCTCACCCCTGTAAACCACCAGACTCACAGACATGGAGGGTAAAGAAGAGATCAGTGACACAGACAGTGGTATCATTCTCCACTCTGGCCCTGATAGTCCTGCCACCATTATGAAGGACGTGACCACTCACACCCGGGCCGTCAAGCTCAAGCACCAGTCACTGGAAGACCGACTAGAGCTCTGCCTACTGGAGCTGAAGAAGCTTTGCATCCGAGAGGCTGAGCTGACTGGTCGGCTGTCTGCAGACTACCCTTTGCTGCCTGGGGAGAAGCCACCTCAAATCCGCCAACGAATCGGAGCTGCCTTCAAACTAGAAGAGCAGAGCATCCCACAGGGAGCAGTGAACTCTGAGCTGAACTCTGTGGAAGCTGAGCTATCCCTGCAGTTGCAGATACACAAAGCGGTCCAAAGACTGTGCTGTGAGGAACACCAGAGCAAGGCGGTGAAGAGAAGCCGGTTACAGCAGTGCAAGCGTGAGGAGAAGAAAGTCAAACAACTGCAGGACACAGCGTTTCAGCTGCGCCTACAGCACGGGCGGTCTTCACCACGGCCAGACTGCACCAGCACACAGAGAGATCAGGGCACTTCTGATGATAGCTCTCTGTCGGATTCGGCACTGCTCGACGAAGAGGTGATTAGTCAGTCATCTCAACCATCCGTGGAGCTCCCTCACCTAGGAGGACCAGTAGATCCTCCCCAGCCTCCCATTGACCCCTCACACCTCCTTGGGCCTAGCCCCCACGAGTCTCCCACTACTACTCCAACCCTGGAGGAGCTACAGTCCCTTTTCAACACCAGCCTGGAATTGGAGCCCCCTCCCATCGAGCACTCGCCCTGGACAGAGTCCAGTCTGGACCAGCCTTACCAGAAGACCAAGAAGAAGTCACACTCTGGTAGCAGAAAGTCAAGTAGTCCAGCCACGACCCCTGTGTTGCCTCCTGTGGACGCCTGTTGTAGAGACACGGCCCTGACACTGCAGTTCTCCTCCCATCTCAAACTGAGCTACACCCAGTCCAACAGCGCCCCATCCACCCCGGAGATGCACCTTCGCCGCCAGCTCTCTCTCAGACTTCCCAACAGTGAGCCTCCGTTGAACCTGGATAAGGATCGAGGACGTACCCGTGTTCCCAGGAGGCTACTAACGGATTACGTGGTAACGTCTCCCGGCGAGTCCCCTGTCCTGAGGGCAGGCTACGGAAATCCCATATACCATTCCAGCTCTGAGACTGAGGACAGTAACTCTGAACACTCTGCCCCATCCTACACCAGTTCACCATGTCGTGAGATGCCTTGTGACCTGCCCAGGCAGTCTCAGCTCACCTATAAGTACCAACACTCCAGCCCCAATGACAATCATCGACCAATGGCCTACCCCCCAGGCCCCGGCTTCTACCAGAACCCCCAGCACCAGTCCAACCCCAGCTTCCACAGGGGTTACTATGACGACAGGATGGTCTACCCTTCAGAGATGGACATGACCAGGCTGTATCATGGCACCCCGCTCCCCTGTCACCCCAGCCAGTATGAACACTGGTACGAGGAGGCCCCTTTGCACCCCCAGCGGGCTCTCAGGTCCCTGCCCCCTCACATCAGACTGTCCCGCGCCCCTTCGCTCCGGGAGTACCCTCACCACCCATCCAGAGGCCTCCCCCAGCAGGTGGTAAACGAAGAGCTCAAGTCGTGGCACCAGCGCAAACAGTTCAGACCTCGCTCCCTGGACAGACAGGGCGTGGCCAGGGTGAGGAGTGTACAGTCACCTCTCACCCAGCACAACAAGTACCATGAACAGGCTCCCCAGAGACGTGTCATCCAGAGGGCAGCGGACGGGTCCCCAGTGCAGTGGTTTGTGGATGATGACTCTGAGATCGTCAGTCAGGTGTAGGACTAGTGAGAGGGCCCCCAGTGCCACCCTCTCTCTGGAAAGCTCTGACCTCCCCCGGCCCACAGAGCCCTATTTATTCATTAATTTATTACATCACTGGACTTGGTGCTGatatgagatgagagagagcgagagactgggcATAGTATCAAAGAGGATCTGAGGCTTTATATTATTGACTTCAACATGTTACTAGGGCAACACGAAAGTCAATTAAAGGCACAAAGCAACAGACCACAACGTTCCCCTGGTGCCTCTCTTTTTACTGTGAAAGAGCCGCTGTGTTGAACATTCTTTCATGGTTAGTTTGTTAGCTGTTTTTTTGTACGAATCTATTGATGTGTTAAGTACTATCAAAAAtgtttctaaaatatatttagatattgTTTTTCTAAAAGGAAAAAGTTTCTCTTTAGAAATGAATACATAATTAAATAAAGATTTATAATGTTAATCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677886 lncRNA upstream 5836 56969324 ~ 56972726 (+) True G1466939
TU1677725 lncRNA upstream 146746 56829387 ~ 56831816 (+) False si:ch73-190f16.2
TU1677726 lncRNA upstream 146746 56829387 ~ 56831816 (+) True si:ch73-190f16.2
TU1677724 lncRNA upstream 150224 56817475 ~ 56828338 (+) False si:ch73-190f16.2
TU1677801 lncRNA upstream 187483 56787434 ~ 56791079 (+) True G1466863
TU1677950 lncRNA downstream 35959 57062917 ~ 57063155 (+) True G1466997
TU1677951 lncRNA downstream 37023 57063981 ~ 57064182 (+) True G1466998
TU1677952 lncRNA downstream 37591 57064549 ~ 57064897 (+) True G1466999
TU1677965 lncRNA downstream 40895 57067853 ~ 57068261 (+) True G1467007
TU1677967 lncRNA downstream 42605 57069563 ~ 57070276 (+) True G1467009
XM_021567497.2 mRNA upstream 2726 56973422 ~ 56975836 (+) True LOC110493225
XM_021568996.2 mRNA upstream 11688 56921695 ~ 56966874 (+) True syt6b
XM_021568990.2 mRNA upstream 107350 56863443 ~ 56871212 (+) True LOC110494174
XM_036950252.1 mRNA upstream 109839 56863434 ~ 56868723 (+) False LOC110494174
XM_021568986.2 mRNA upstream 148801 56817290 ~ 56829761 (+) False si:ch73-190f16.2
XM_021569001.2 mRNA downstream 3188 57030146 ~ 57042111 (+) False LOC110494181
XM_021569002.2 mRNA downstream 3189 57030147 ~ 57042250 (+) True LOC110494181
XM_021569004.2 mRNA downstream 15467 57042425 ~ 57050988 (+) False LOC110494182
XM_036950255.1 mRNA downstream 15468 57042426 ~ 57050988 (+) True LOC110494182
XM_021567442.2 mRNA downstream 24638 57051596 ~ 57060451 (+) False adipor1a
TU1677617 other upstream 395841 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 757616 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 851081 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 961949 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 90744 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 119555 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 122345 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 451839 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 471424 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile