RNA id: XM_021567443.2


Basic Information

Item Value
RNA id XM_021567443.2
length 3556
RNA type mRNA
GC content 0.47
exon number 8
gene id adipor1a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57051596 ~ 57060451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTGAggaggaaaacaataatttgtacACCTTCAGTTTGCTGGAACAACGTAGCTCTGGTTGTGGCAGTTGAATGTTGTCGCAAAGAGGAGTCGTCTGCATGGTCCATATGCTGGGACAGAGTGGGAGTTGGAAATGTTCTTCTAATTCCACTGCCTACACTGTTGACAGGGATTAGGGATTACTGAGGATTGGAGATGCTGAATTGCTGTTGGTTTGGGTGTAGGAGTAGCTCTCTCCACAAGGATGCTGGATGcggatttattttaattttatttaagcTTTTCTTATGCTGCTAAAATGTGGCGTCGGCAGCTCCGGGCCGAATACAATTTTTAACATTGTAAAGTACAAGTAACGTTCATGTGGGTTCGTGCAGGCACTATTATGGAGGTAATGCGATTCCACTGAATCATTAATAGCAGAAGCACGTGCATGACCTGGGAATAGAACATTACTATTTTTAGCCTATGTTGATTTGATATCATTCATAGGGGGTTAAACCTAAAACATTTTAACCGTTGTACAATTGTAATTTTAACCACTAGATGGAGACGCAGCGTCATTGTTTATGAGGCCCAGTTAAACGTAAACCAGTTGCTTGGCATTAATATAACTTGTAATTTTCATTCGTCGTGCTTCGTGACTGTTCGGAGGTTCGGCTTGTTTTTGTAAGAATCCGGAAGGGATCAGGTTCACGTTTATTTTGCCGTCTGGAGTATAAGTCCTCAGTACTGGCCAACTGAGAACTGAAAGTGCCAGGCTTTAGCAGGATACACGGGCAGAGGACAGGTCATCAGGCGGTCTCCCTATGTCAGGCCGAAACGGGTCTGCGAGCGATGCAGACTGTCGGATCTCGGAGGACTGCCGGTCCCCGGATGTAGAGCTGATGGAGTTGGGACCCCTGCTGGAGGAGGCGGGCCGGCAGGCAGGGGGGAAAGGCATGATGTCGGAGGGGGCCTCAGTTCTgcctgatgatgatgaggatgatgatgacgaAGAGGTGGAAGAGGTCCTGACGCTGCCCCTCCAGGCTCACCACGCCATGGAGAAGATGGAGGAGTTTGTGCACAAAGTGTGGAAGGGTAGTTGGAGGGTAATCCCTTTTCACGTCCTGCCGGAGTGGCTGAAGGACAACGACTATCTCCTGCATGGACACCGGCCCCCAATGCCCTCCTTCCGCGCCTGCTTTGGAAGCATCTTCAGGATCCATACAGAAACAGGCAACATCTGGACCCACCTtctggGGCTGATCCTGTTTATTTGTCTGGGCACGTACACCATTCTGCGGCCCAACATGTACTTCATGGCACCTCTGCAGGAGAAGGTGGTGTTTGGGATGTTCTTTCTGGGCGCGGTGCTCTGCCTCAGCTTCTCctggctctttcataccgtctaCTGCCACTCTGAGAAAGTGTCTCGCACCTTCTCCAAGCTTGACTACTCAGGTATCGCCCTGCTGATCATGGGTTCCTTCGTGCCCTGGCTCTACTACTCGTTTTACTGTTCCCCACAGCCACGCCTCATCTACCTCACCATCGTCTGTGTGCTGGGCATCGCCGCCATCGTAGTGGCCCAGTGGGAGCGCTTTTCCACGCCCGCGCACCGGCCCACCCGAGCAGGAGTCTTCATGGGCCTGGGACTGAGCGGCATCGTCCCCACAGTGCACTTCACCATCGAGGAGGGCTTTGTCAAGGCCACCACTGTGGGACAGATGGGCTGGTTCTACCTGATGGGCGCCATGTACATCACTGGCGCCGGACTGTACGCCGCCAGGATCCCTGAGCGCTACTTCCCCGGCAAATGTGACATCTGGtTCCACTCCCACCAGATCTTCCATGTCCTGGTGGTTGCGGCAGCCTTCATCCACTTCTACGGCGTCACCAACTTGCAGGAGTTCCGCTACGGCCTGGAGGGAGGCTGCACTGACGACACCCTTCTCTGAGAGCAGCCCAGCTGTGGCCCCCTCAGCCATTTCCTGGTCGATGCCCCTCCCTCCCCCGCCTCCCTACCCTATAAAGTGCTGCTGGAACACGCCATGGTCCCCCGTAGCTCCTTCTCTccactcttcttctcctcccctaATTTGCTCATGTCATACTTGGTTTTCTGGTGGTGGTTCGCTGCTTGGGCTCCTTTCTCCCCATTAAAGTATCTTTAGCCAGTGAACTAAATGAAGGGGCATCCCGCCGATGCGGCACcacttttttaaaaatcaaaatgAAGCTCTAGGCTTGACTTTAGCTCATTAAGAACAACAGGGGATTTTTGACCAGATTGATTACATGTTTCCTTGAAGGAAGGGAACCTCAAAGTCATAGAGATATCGTAATGGTGTCTTTCTTGGCCTACAGAGCTGCCTACATCAAGTTGTAGGCGGCTTGTGTGATAAAATGGGTCCGGGTTGGGGTCAATACATTCCATATTTATTCTGTCAATACAAGGAATTATTTGAAATTCAATTCATGAATTGAACATTGAAAAGTCCTGATTGAAAACAATGGGCAATTCCAACAATTCATTATGGGCATTTGATTCTGttgatttaactttttttttaaacagtcaaCCCCAACCCAGGTATGGGTTATGGAGCTGGAAGGCAAACAATTTAAATTACTTTCTTACAAGACATGGTGCTTGGTACCCTTACCCCTCATGTCCCTTTACAATTGAACACAATCTTGTATGATTGATAGCTGGTATGAAACTAACCTTGCAACGCACAATGGGCAAATCTGGGAATAGGTTAACTCTTTCTCTTCTCATCTTGAGTTTCTTTTTAAGGCTATATTTCAGAACTCTTAAGGTCAAATTATTGCACCTTAAAGGTATGTTATTACCGTTTAAACTTTAAGTCATTGCATAGGGTCCACCGTGTAGTGTGTATGAATAATAATTTAGTATTCCTGTGCCTTATATGCAAACCTCACCGGCCACGTTGCGTgccgcgagcgttgcaaaataaatgtacaaataCATGTTGTTCACACCGCTCGCGTGAATGAGCGCCTGCGTAGCCCAgctctaaaatagaacttggttctattgaGAAGCGCCAGATGCTGCAAGTCCCCTCCTTATTGGATATCAGGAAGATAAAAAGGGAAACCTACTTAGTTTCTAGTTCTGTGGATTAATGGTCGGGGTAGAGAAACGCACAACTGCGTCTGTTGTGATTGCATCAAatgtggatggacaaaatcagCATACGCACGCGTGTGGCCGGTGTAGTCCGCATGTTAGGCCAATGGAAATAGTTTTTCAATAGATGGGCCAATATTGCAGTCAAGTGAACTTCATTAGGATCTCCAGATATGATAGGGTCCTTTATTTTTTCCCCCTTATATCAATTCACTATTAAACTTTTGACCTCCAATAGTTCTCAAACTGCTATTTATGAAGACCTTTTTTTTTAAGCTGACTTTGTGGCTTTATTACAAAGACTAAGCAATCTATGTATTCTTGACTTTGTGTTATATCCTGTGTAGACAAGTTCATGGATCATACATTTCTCTGAAATGTAAACACATAATAAATATTTATTAATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1677837 lncRNA upstream 24683 57024788 ~ 57026913 (+) True inavab
TU1677886 lncRNA upstream 78870 56969324 ~ 56972726 (+) True G1466939
TU1677725 lncRNA upstream 219780 56829387 ~ 56831816 (+) False si:ch73-190f16.2
TU1677726 lncRNA upstream 219780 56829387 ~ 56831816 (+) True si:ch73-190f16.2
TU1677724 lncRNA upstream 223258 56817475 ~ 56828338 (+) False si:ch73-190f16.2
TU1677950 lncRNA downstream 2466 57062917 ~ 57063155 (+) True G1466997
TU1677951 lncRNA downstream 3530 57063981 ~ 57064182 (+) True G1466998
TU1677952 lncRNA downstream 4098 57064549 ~ 57064897 (+) True G1466999
TU1677965 lncRNA downstream 7402 57067853 ~ 57068261 (+) True G1467007
TU1677967 lncRNA downstream 9112 57069563 ~ 57070276 (+) True G1467009
XM_021569004.2 mRNA upstream 608 57042425 ~ 57050988 (+) False LOC110494182
XM_036950255.1 mRNA upstream 608 57042426 ~ 57050988 (+) True LOC110494182
XM_021569002.2 mRNA upstream 9346 57030147 ~ 57042250 (+) True LOC110494181
XM_021569001.2 mRNA upstream 9485 57030146 ~ 57042111 (+) False LOC110494181
XM_021568998.2 mRNA upstream 24638 57011041 ~ 57026958 (+) False inavab
XM_021569005.2 mRNA downstream 4593 57065044 ~ 57067062 (+) True rabif
XM_021569006.2 mRNA downstream 13470 57073921 ~ 57105178 (+) True LOC110494185
XM_021569007.2 mRNA downstream 45367 57105818 ~ 57111562 (+) False nelfcd
XM_021569008.2 mRNA downstream 45367 57105818 ~ 57111562 (+) False nelfcd
XM_021569010.2 mRNA downstream 45377 57105828 ~ 57111562 (+) True nelfcd
TU1677617 other upstream 468875 56580391 ~ 56582721 (+) True LOC110494160
TU1677057 other upstream 830650 56219242 ~ 56220946 (+) True G1466224
TU1676992 other upstream 924115 56088178 ~ 56127481 (+) True LOC110494143
TU1676956 other upstream 1034983 56015577 ~ 56016613 (+) False G1466131
TU1677978 other downstream 57251 57117702 ~ 57118886 (+) True G1467020
TU1677991 other downstream 86062 57146513 ~ 57147741 (+) False G1467030
TU1677994 other downstream 88852 57149303 ~ 57150343 (+) True G1467031
TU1678132 other downstream 418346 57478797 ~ 57483589 (+) True G1467159
TU1678194 other downstream 437931 57498382 ~ 57548178 (+) False LOC110494206

Expression Profile