RNA id: XM_021569011.2


Basic Information

Item Value
RNA id XM_021569011.2
length 2609
RNA type mRNA
GC content 0.43
exon number 9
gene id stx16
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57132997 ~ 57145296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggtgactgtgctgcttgcaacaatttaattacgtttttttGACGACATTTAGTGACAGCGGCCCTATTCAACATTGgtaaattcgtcagttattctgcgctctagcACACTCGGACGAGAGAGCCTGAGTGAATGTACGAACGCACCCGTTCCACGTAGCTAGAGAAGGCCGTTTTTTTTACCACCGACCCGTTCTATCATTTCCACTTTTCATTGAAAACAAACCATATCCGTCGTATTTTATGGTTTTATTTATGCATTTCGTGAAAGCTACAGATAACAAAGTATATGTTATTGTGAAGATAGAAAACGGAAGAACCCCTCGATTAGCCGGTCGGCGAGTGTGCCTGCTGTTTTGCTGGCTAGCTCACGTTAGCTAACTTTCCTTGTATTGTAACTTACTAgtaagttaacgttagctagctaggttctAGTCGTTGTTATTTGTTAGCTGTACATCCTTCGTGTGTAAATTAATCATGGCGACTAGGCGCCTGACCGATGCCTTCTTATTAATGCGGAACAATGCCATCCAAAATCGGCAGATATTGGCTGAGCAAGTGAGTACATACGACCCCCGTCGTACTCTGAGTACACGTAGCAATGCTGCGGAGCTTGATGAGTTGGCTGATGACCGCATGGCCTTGGTCTCAGGGATCAGTCTGGACCCAGAAGCTGCCGTCGGAGTCACCAAGAGACTGCCGCCCAAGTGGGTAGATGGGGTCGTTGAGATTCAGTATGAAATCACACGGGTCCGGCAGAAAATGAAGGAGCTGGCCGCCCTCCATGACAAGCACATGAACCGCCCTACCCTCGATGACAGCAGTGAAGAGGAGCATGCCATAGAGATCACCACTCAGGAGATCACACAGATGTTCCACCGGTGTCAGCGTGCAGTGACAGGTCTGCAGACTCGCTGTGGCCACTGcacagagcaggaggagaggctGCTGAGAAATGTGGTGTCCTCGTTGGCAGGGAGCCTGCAAGAGCTGTCCACCAACTTCAGACACACGCAGTCCAGCTATCTGAAACGCATGAAGAATCGTGAGGAGAGATCCAAACACTTTTTTGACTCTGGTCCTCTAATGGAGGAGGATGAAGACCTGGCACTATATGAAATGGGGTTTACAGATGACCAGCTGGTCCTGGTAGAGCAGAACACAGTGATGGTGGAGGAACGTGAGAGAGAGGTCCGACAGATAGTCCAGTCCATCACCGACTTGAATGAGATTTTCCGAGACCTGGCAGGAATGGTGGTGGAACAGGGCACAGTACTTGACAGAATTGACTTCAATGTGGAGCAATCGTGTGTCAAAACAGACGAGGGGTTAAAACAGTTACAAAAGGCTGAACAGTATCAGAAGAAAAACCGAAAGATGCTGGTTATTTTAATTCTTACTGTTATAGTTGTTGTTCTAATACTTATACTATTTGGGACCAAGTTCTAGTGATGCATTCCTTTGCTTttggtatgtctgtgtgtatgtttggtgtGCATCTATGTGTGCTTGTGTGAGGAGTGTCTGTCAGTATCGTTTAAAGTACAATCTGTCCAACTTTCCAATCACCCTTCCCGAATCTCTCTCTGTATGGCTCATGAAGATGTATTGAATGCATGATCCCTAAGAGAGGACAGCCAGGGAGAGTTCCTATTTCACTTTTCAACTGGCCTGCACACATGGCCACTGTCCGCCCCAATACCCTCTTAAACATGACCGTACCGTACCCTACATCTGTCATGGTTACtgctgcaaacaaacacagaaaaaAACACTCCTTAAATTCACTTGTGGAAGACTACTGATTAATTGTCATGGCCACACATTTAGCTTGTTTTTCAAGCAAATAAGTGGTTTGCTTGTGTGAGCATATCATatgtccagttttattgtaagcTATAGCTGCTGTAAGCCCTGCCCTCCAATGTCTGTTTTCAAGAGAAGAATCCTGACAACTCAACTAGATGAATATTGAATGTCTATGAACAAGGAACATTTGTGTCTCGTGGCGATTCTACACGACCCTGGTCATTTTTGCATTTGATTTTTCACTTTATCATGGTTACTTTTTTAGAGAGAGAAATGACAAGGTTTGCAATCAGTGGCTGAAAAACTACAATAGCTAATTCATTGAATACCAAAAACAACCTTTTGGGTTAAGAGCTGTAGTTGACCATCCTAAATTCATGTATCTACCAAGAGTAGTGTCTTTAATGAATTTGCACATTTAGATCACTTGATGACTGCTTTCTTTTGTTTCATGACCTTCTATTGTCTGATATCGCTAACTAACACATCAGTTCAGTTTGTTCTTGTCTTTTATCCCTCACAGTTTGCACATATCGAAAGACTGATGGGTTTGGTTTCATGGCTGTGAAACggtctcctgtataatatgaaattataattatttattttgaatTTAAATTGTATAAAAGTTCAACGTTTTTTTGTCTAATATGACAAAGATGTATTGAGTAGCCTACATTGTGTCTTTGGCCTAAAGTATGGGGATGAAAATTGTGATCAAGCCTTGATCTCAGAAATGACTTTGCCCATTCCACTACAAAATCAATTAAAAATTGAGTACCTTTTTCTCACACTA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU1678770 lncRNA downstream 21023 57111128 ~ 57111974 (-) True G1467714
TU1678846 lncRNA downstream 104022 57028504 ~ 57028975 (-) True G1467785
TU1678687 lncRNA downstream 260016 56827756 ~ 56872981 (-) False LOC110494175
TU1678686 lncRNA downstream 260016 56870865 ~ 56872981 (-) True LOC110494175
TU1678685 lncRNA downstream 303607 56827756 ~ 56829390 (-) False LOC110494175
TU1678885 lncRNA upstream 2016 57147311 ~ 57148712 (-) True G1467816
TU1678892 lncRNA upstream 16355 57161650 ~ 57161886 (-) True G1467823
TU1678899 lncRNA upstream 28253 57173548 ~ 57173797 (-) True G1467830
TU1678900 lncRNA upstream 29213 57174508 ~ 57174798 (-) True G1467831
TU1678979 lncRNA upstream 160547 57305842 ~ 57310683 (-) True G1467898
LOC110493226 mRNA downstream 10290 57121443 ~ 57122707 (-) True LOC110493226
NM_001124495.1 mRNA downstream 16287 57113006 ~ 57116710 (-) True cathy
XM_021568997.2 mRNA downstream 160365 56966942 ~ 56972632 (-) True olfml3b
XM_036948422.1 mRNA downstream 212223 56900273 ~ 56920774 (-) True LOC110493224
XM_021568992.2 mRNA downstream 243285 56886866 ~ 56889712 (-) True LOC110494176
XM_021567422.2 mRNA upstream 84145 57229440 ~ 57232758 (-) False hig1a
NM_001160510.1 mRNA upstream 84148 57229443 ~ 57232708 (-) False hig1a
XM_021567423.2 mRNA upstream 84319 57229614 ~ 57232755 (-) False hig1a
XM_036947896.1 mRNA upstream 84319 57229614 ~ 57233433 (-) False hig1a
XR_005037022.1 mRNA upstream 148941 57294236 ~ 57308483 (-) True LOC118940479
TU1678489 other downstream 632672 56494856 ~ 56500325 (-) False elmo2
TU1678487 other downstream 632797 56494856 ~ 56500200 (-) False elmo2
TU1678490 other downstream 632862 56494856 ~ 56500135 (-) True elmo2
TU1677371 other downstream 965660 56162860 ~ 56167337 (-) True dnai1.2
TU1677293 other downstream 1162283 55954473 ~ 55970714 (-) True LOC110494137
TU1678904 other upstream 84212 57229507 ~ 57232707 (-) False hig1a
TU1678906 other upstream 84212 57229507 ~ 57232707 (-) True hig1a
TU1682225 other upstream 2529246 59674541 ~ 59676694 (-) True G1470802
TU1682385 other upstream 2845680 59990975 ~ 59996326 (-) False LOC110494253
TU1682386 other upstream 2845680 59990975 ~ 59996326 (-) True LOC110494253

Expression Profile

XM_021569011.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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XM_021569011.2 Expression in each Bioproject

Bar chart with 21 bars.
XM_021569011.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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