RNA id: TU1678195


Basic Information

Item Value
RNA id TU1678195
length 2475
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC110494206
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57498305 ~ 57548178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGGGGCACCGGGCCAGGCCAAACGAACTTGCCCAATAACAGTTTTCAGGTTACATGTCCTTCCCATTAGCCTCCTCCAATTAGGctcctcactcagaccactcaaATTCCTTCTTGAGAAatagctatttttgtttattttgaatatttgaattgaaaacaatcacagtaaggtacttaattgatACCaagaaaatatttgaaattgagataaaaacaCCTGCAATGGACCTTTAAAAGTGAACAGGAAAGGGTTGTAACACACATTCTGTTTTACTGCAGAAGCTCATAACAGCTCAGGTGACCTCAATATCAACCTGCACACAATGTTTAGATGAACTAAGACAAACATGTCAAAGCTACACTCATAAAACCTTCTGGTTGGTCTAGGGCACGCAATTTTAGAATTCAAGATTTGGCTTGTTAGATTTTTGTATAGCCCATCTTTGGATATCTATTACATATCAACTAAATCAAGAATTAAAAATCAAGAATATGGGAATCATGCAAGGGTGCCAGTTTACACTACTGTAATTGTCAGATTATTTTGTATGGAGTAAATTCACAGTGAAAGGGAACCCCACAAGTACATTGACTAACCTGGTCCACATGACTATAGCCTACTTAGGCGGTGTTTACACAGGCAAGcaaattctgatctttttcccactaattggtcttttAGAGTGGACCTGATTGATCAGAAGAGAGATtagtgaaaaaaagatcagacttgggctacctgtgtaaacgcagccttatATACTTCTGTCGTTTTCACTCTGCACACTGTGCATTTACCATTCCCATTTACACAAACAAACCTAATGTTTATTCTGACAAGTTGCTATGGTGGGAATGTTAAGATGGTTGTGGCAAATAAGACAACCTTGTGTTGGAAAGAAAATCAAATGCTTGATTGACATAGGCCTTCATACTAGTAAGTAAAGGGAAGAAGAGTCATATAGAAAATAAGGAACATTGATACGGACAAGAATACAGCTGAAATGCCATTTCTAGTTTAGAgagaacatatattttgattgaaTATCTCAAtgcccccaccccccacctcAACTGCATCTGTAACATGCAGTAAATATTGGAAGTGCTTGAACAGAGTGTAGATTAGAAAGTCTGTCTTGTCTCCTGGATGTCAAAGCGAAGATATCCCTTTGTTAAAAACGAAAGCACTATGCTGTTGGATAAAGGAAGAGCCTTCTAAcattatatataaataatatatgtatataataaAAAGGGGTACAAAAAATACTTTCTGGGCACTACCTTACCAACAATAAATTTTGCACTATGGGACGTTCATGGCGTGAGGAGTCGTGTTGTTTGTATTTTACCTTAAGAGCTTTTACAATTGAAAAAAGAACGGTCCAAGCGTCTGGCGATACACCATGTGGATAGACTAGTGAGCCTTTCACTTCTTTTGTTACCATCACACTTTCCTGACTTCCTTTTCGTCTGAAGCGGAGGCCTGTCCATATTCTCACGCTCCTCTTACACTCATCTCAGAAACCTGGACTGACCAGCGGCCAAAAGGCCTCCTCGGCCTCCCGGGGTGATAAGTCGTGTGTTACAAGTGTCTGGACCGATGAACATAGAACGCTTTAAACTGGAAATGCCCCTCCGTCAACTTCAATCAATCTGTCATCAACTCTGAGAGACTTTTGTCCTTTTGAATTTGAGCGACTTGTGTTGACAGTCTAACCACAGACATGTTTTGCCTTTGTGTGTTTTGAGTGAAAGTGCCCATATTAGAATGGGAAAAAGTATCCAGGGATCGTTAGCCAAAGTAGAGGATGATATGTGTGCTGTAACTTTTGTAACTGCAGGAATATATATGCTAAACAATTtcaaaggaagaaaaaaaatgtggTTATGGGCAGCGGTTGGAAACAATTCAACTGGTCAAGTGTCTCTGTATTTATTAAGATCAAATCAATGAATTTCAAAGTATGTCTACCTCACTTCAGCATTCTGTTATAAATTTGACAGTTAAGTTTTGTTATGAGTTAATCTGTGCAAACTTGTAACCTGGATAGTAAACCCAAAAAAGTAGACTAAAGCCACAGGGTCACCTTGGTCTCAAGTCAAGATTGAGTAATTGACAGCTGAGTTGAAAAGAGTGACTGAAGCAAATAGCTGAAGGTAATGTATACTgccaaaagaagaagaaaatggcTGTGCCCAGGACCATGGCTGAActctggttaatgctgtggataAAGTTGCATTTTTCATTTTTGTGTCTGTATACTGGTATGTGTAAGAAAGTGTTttcatatatataaaaatatgagAGGAAAAAATCTCTATGTAAATAAATACCCAAATGTTACATTTTATGTTTTGGACAGGTTCTCCGCTTCTGTTTTTGCCAACTTTCTTTTGCTTTCATTTGTTCATCATGTTGTATAGATAAAATTCACCCCAACATTGTAGTTTAATGGTTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1678183 lncRNA upstream 72361 57473088 ~ 57473322 (+) True G1467206
TU1678182 lncRNA upstream 72887 57472569 ~ 57472796 (+) True LOC110493228
TU1678177 lncRNA upstream 81099 57464300 ~ 57464584 (+) True G1467200
TU1678175 lncRNA upstream 82500 57462979 ~ 57463183 (+) True G1467198
TU1678157 lncRNA upstream 104019 57441450 ~ 57441664 (+) True G1467180
TU1678295 lncRNA downstream 92389 57640567 ~ 57640839 (+) True G1467307
TU1678296 lncRNA downstream 93071 57641249 ~ 57641480 (+) True G1467308
TU1678303 lncRNA downstream 101035 57649213 ~ 57649433 (+) True G1467315
TU1678326 lncRNA downstream 145472 57693650 ~ 57693953 (+) True G1467338
TU1679246 lncRNA downstream 156625 57704803 ~ 57705010 (+) True G1468149
XM_021569041.2 mRNA upstream 201 57498305 ~ 57545482 (+) False LOC110494206
XM_021569042.2 mRNA upstream 201 57498308 ~ 57545482 (+) False LOC110494206
LOC110493228 mRNA upstream 71116 57468753 ~ 57474567 (+) False LOC110493228
XM_021569018.2 mRNA upstream 215956 57305815 ~ 57329727 (+) False tegt
XM_036950258.1 mRNA upstream 215956 57305991 ~ 57329727 (+) False tegt
XM_021569032.2 mRNA downstream 107771 57655949 ~ 57665568 (+) False LOC110494197
XM_021569033.2 mRNA downstream 107771 57655949 ~ 57665568 (+) True LOC110494197
XM_021569038.2 mRNA downstream 135667 57683845 ~ 57688188 (+) True LOC110494203
XM_021569040.2 mRNA downstream 145998 57694176 ~ 57697563 (+) True LOC110494205
XM_021569035.2 mRNA downstream 157242 57705420 ~ 57712033 (+) True LOC110494199
TU1678132 other upstream 62094 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 395340 57149303 ~ 57150343 (+) True G1467031
TU1677991 other upstream 397942 57146513 ~ 57147741 (+) False G1467030
TU1677978 other upstream 426797 57117702 ~ 57118886 (+) True G1467020
TU1677617 other upstream 962962 56580391 ~ 56582721 (+) True LOC110494160
TU1678198 other downstream 41687 57589865 ~ 57614300 (+) True G1467219
TU1680364 other downstream 959119 58507297 ~ 58507885 (+) True G1469076
TU1682011 other downstream 2553714 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 3424300 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 4008141 61556319 ~ 61557038 (+) True LOC110494283

Expression Profile