RNA id: TCONS_00046355


Basic Information

Item Value
RNA id TCONS_00046355
length 2594
RNA type mRNA
GC content 0.39
exon number 16
gene id XLOC_023436
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 21959708 ~ 21973365 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTTTCTCCGCGGGTCCTGAAGTCTGCATCGTCCCTGATGTGTAGAGGATTTTCTATGGGGCAAATGTGTAGACAAGGGAAAGCACCTGATATGGCAGatgGAAACACATTTTTACTTGTGAGCAATGTTCGCAACAGGCTGAGGGAAATAGTCGGTGCCTCTACCAACTGGAGAGATCATCAGCAAGCATTAGCTGAGCGTGCATCACTAACCCAGTATCTTGCAAATAGTCAGGATGAACTGCCTACAAAGACAATGAAGGACAGTGCAATTGAGGCACATCTTCCTCTGGGTACCCAGCCTGCTTTAAGAGAGAAATATCTCAACTATCATAACAGTGTCAGATTTGGAAGAATATTGGAGGATTTGGACAGTTTAGCAGTGCTCATCTGTTACTCTCACACGTGGAATAAGGAGCTGCAAAGATCTCCACTGTCTATTGTCACCGCCCTAGTGGACAAGATCGacATGCGAAAAAACATCATCTACCCAGACTGTGACATCAAGTTCACAGGTCATGTGACATGGGTTGGCAAAACCTCAATAGAGGCCAAAATGCACATGTCTCAGTTTCATGATGGGGTGTACTCTGATGTATTAGATGCTACGTTTGTAATGGTGGCTCGAGATCCTGAAAACAAAAGGGCAGCTTTTATAAACCCTTTGAAACCAGAAGGACCAGAAGAAGAGGCCATCTTTCAGCAGGGGGAAATAAACAAGAAGAGACGTGTGGAGCTGAGCACGGCGTCTCTTCTGAAAGTGGCTCCTACAGCGGAGGAGAGGACACTCATTCACAACCAGTTCCTCAACACTCTTGACACACGGACTGTCAGCTTTCGCAGTCGGATTTTACCACCAAATTCAGTGTGGATGGAAGATGCCAAAATGAAAGGGCTTGAGATTTGCCATCCACAGGAAAGAAATATCTTTAACCGGATATTTGGTGGTTTTCTGATGAGAAAGGCTTATGAGCTTGGTTGGGCCAATGCTTGTGCATTTGCTGGATGTAGACCTACGCTGGTGGCTGTAGATGATATCTTATTCAGGAGGCCAGTAGAAATCGGCTCTTTGCTGTTGCTGTCCTCACAGGTTTGTTACACAGAAGGAATGCACGTCCAGGTTCGCGTTCACACAGAGGTGCTCGACCCACTGACCCGACAGCACAGCACCACCAATGTGTTTCACTTCACTTTTCGGGTTGATAAAGATGTTCCAGCTGTTGTGCCACAGAGCTACGGAGAATCAATGCTTTACCTGGACGGAAAGAGGCACTTTGATGAGACCATGAGGGGCCAAAGTTGAGCATCCTGGGATTTGCTGATGAGATTCCTGAAAAAGCTGTAGTGATGGTCAGCACTGTAGTTTCATGagaatgtgtatgtgtggattCAACTATTATTACTCTTGCTCCATTCAATTCATATGCACTATTatattttatagcatttttatattaatgttatatattatttttctcaGTTGACGCTTGTAAGGAGAGAGAAAAATTTAGGTAAATTGGCTGTTTAAGGTGTTTTTGCAGACATATGTCAAATGTGGTGCTTTTGCAACATGTTTAGTTGTTATAACTTATAATTGACcatgttttgtttgcttttcaGCGACATTCAGAATGAGAGAGTACTTTAACCAAAATCATGTCATTTAAGAGTCTTTAAAGTGATGGAATTGACCTGTTTCGTAGTGTTACAGATCTGAATTTAGCCAGAGCATTTTATGAAAAGACGATATGTGGACAAATTTTGAGATTAAATGCAGTCTTCCTTTCTTGATTTGTGAGTACACTCTAAAAACTTTGTGTAACTGAGAGAAAAGTATACATGTGACTATGGTTTTGCAGTCAAATCTGCATATATTTACTGTGCTGATAAGTCACTTTTATATGTAACATTCTTTTTACTTTGTTCTAAGTCTTTATAAAAGGCGGTAGTATGGTTTTACAGACTGTAAAAGTTCAGGTTTACACTTATACAAGTAGATACTGGAAGAGGATGGGTTTTTTTGTACACACTACCTGTGCCAGATTGACCAAAAACTGACAAATGAATGCATGCCTTTTTTCACAAAATATAGTTAGCCTCATAAATATTGATTGaatgataataaaacatttatattattttctgcatTTGTATAgcagttatatttttgtttgtttcttaatGTGCTGTTGTCAACACAGAATCCTAAATATCTTCATCTGCATTGCCTTATTGCAATACATATCTCAGAGATGGATTCTATATTGGTTTCTTATTTCCACAAGTAAAAGTGTCCAGTATTACCGATACTCATGGTTTCTGTGGGTTTATGAAAGTATTTTCTTTACCATTTGCATTGCTGCTCATTGCTATTTGCTCAAAAACAATATTTAGACATTTGCACTCATAATGAAAgtgttgaaaataaaacaaatattttttttataaatgtacttttagagaaCATATCGAGGTATTATGTGtgttaaaaaaagtcttaacCTTTACATTCATAAAAATCACCTGCTGAAAAAGAATTCGGTAAACAACCTCACTccatctaaaataaaaaactgttttatcaGAGTAGCC

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0047617 acyl-CoA hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-139 Predicted to enable acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process. Predicted to be active in mitochondrion. Orthologous to human ACOT9 (acyl-CoA thioesterase 9).

Ensembl:

ensembl_id ENSDART00000030592

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 339452 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 589954 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 590128 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 728537 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00047177 lncRNA upstream 80444 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046366 lncRNA upstream 97856 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 97856 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 150521 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 717618 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046354 mRNA downstream 7544 21938741 ~ 21952164 (-) True XLOC_023435
TCONS_00046353 mRNA downstream 25137 21923348 ~ 21934571 (-) True XLOC_023434
TCONS_00046352 mRNA downstream 35778 21917211 ~ 21923930 (-) False XLOC_023434
TCONS_00046351 mRNA downstream 38419 21917012 ~ 21921289 (-) False XLOC_023434
TCONS_00046350 mRNA downstream 38446 21917012 ~ 21921262 (-) False XLOC_023434
TCONS_00046360 mRNA upstream 4865 21978230 ~ 21989406 (-) True XLOC_023438
TCONS_00046361 mRNA upstream 17599 21990964 ~ 21991770 (-) True XLOC_023439
TCONS_00046362 mRNA upstream 28725 22002090 ~ 22003031 (-) True XLOC_023440
TCONS_00046363 mRNA upstream 41445 22014810 ~ 22015751 (-) True XLOC_023441
TCONS_00046364 mRNA upstream 96925 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046316 other downstream 815408 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1301040 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1428122 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046292 other downstream 1488618 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046277 other downstream 1772278 20187316 ~ 20187430 (-) True XLOC_023401
TCONS_00046365 other upstream 97856 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 335579 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 398621 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046386 other upstream 1299877 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1997691 23971056 ~ 23977285 (-) False XLOC_023458

Expression Profile

//