RNA id: NM_001124736.1


Basic Information

Item Value
RNA id NM_001124736.1
length 2139
RNA type mRNA
GC content 0.60
exon number 1
gene id LOC100136832
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59210677 ~ 59245106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTCCAAGCCCCCTCCTCTGGCCCCCGCTGGCatggctgtgtgtggggctgcTGTTGCCCCTGGTGCAGGGCGGGGAGTGCccgcggctgtgtgtgtgtgaggtgcgCCCCTGGTTCACCCCCCAGTCCACCTACAGGGAGGCGGCCACGGTGGACTGCAACGACTTGCGGCTGACACACATCCCCTCCAACCTgtcttctgacacccaggtgctGCTGCTCCAGAGCAACTCCATCGCCCACACCAGCGGGGAGCTAGAGGCCCTGTTCAACCTGACGGAGCTGGACCTGTCCCAGAACAACTTCAGCACAATGGAGGCTGTGGGCCTGGCCAACATGAACCAGCTTACCACCCTTCACCTGGAGGAGAACCAGATTAGCCAGCTGCCTGACCACTGCCTGCAGGACCTCAGCAACCTACAGGAACTCTACATCAACCACAACCAGATCAGCACCATCGCCCCCGGGGCTTTCTCCGGTCTGCATAGCCTGCTGCGCCTCCACCTCAACTCCAACAGGCTCCGGGTTATCGACAACCGCTGGTTCGAGGCAACGCCCAACCTGGAGATCCTGATGATCGGAGAGAATCCTGTCATTGGCATCCTGGACATGAACTTCAAGCCACTGGGGAGCCTGAGGAGCCTGGTCCTGGCCTGCATGGACCTCACCGACATTCCTGGGAATGCTCTGGTGGGCCTGGATAACCTGGAGAGCCTATCCTTCTACGACAACAAGCTGGTCCGGGTGCCCCAGCTGGCCCTGCAGAAAGTGCCCAACCTGAAATTCCTAGACCTGAACAAGAACCCAGTGCACAAGATCCATGAGGGAGACTTCAGGAACATGCTGCGTCTGAAGGAGCTTGGTATCAACAACATGGCTGACCTGGTATCCATCGACTCTTACGCCCTGGACAACCTGCCTGAGCTGACCAAGCTGGAGGCCACTAACAACCCCAAGTTGTCCTACGTGCACCGGACGGCCTTCAGGGACGTGTCCTCCCTGGAGAGCCTGATGCTAAACAACAATGCCCTCAACTCTGTCTACCAGCACACCGTTGAGGCGCTGCCCAACCTCCGCGAGATCAGCCTGCACAGCAACCCACTACGTTGCGACTGTGTCATCCAGTGGATGAGCTCCAACAGGACCAGCGTGCGCTTCATGGAGCCCCTGGCTATGCTGTGTACCTCGCCGCCCGAGCTCCGGGGCCAGCGGGTCAGAGAGGTGAAGCTGCCGGACTCCCCAGAGCAGTGCCTGCCTTTCATCTCCCACGACACCTTCCCCAGCCACCTGAGCCTTGAGCTGGGCATGAGTGTCAGCCTGGACTGCAGGGCTATTGCTGAGCCCGAGCCAGAGATATACTGGGTGTCTCCTATGGGGAGCAAGATAACAGTGGACACGGTGTCGGAGCGGTACCACCTGAGCAGTGAGGGCACCCTGCAACTGTCCCACGTCCAGGTGGAGGACTCCGGTCGCTACACCTGCATAGCCCAGAACACAGAGGGCGCCGACACACGCGTCACCACCATCCGCGTCAATGGCACCCTGCTGGACAGTGCCGAGGTGATGAAGATCTACGTCAAGCAGACCGAGTCCCACTCCATTCTGGTCTCCTGGAAGATCAACTCCAACGTCATGACCTCCAACCTCAAGTGGGCATCGGCCACCATGAAGATTGACAACCCCCACATCACCTACACTGCACGCGTGCCCGTCGACGTGCACGAGTACAACCTGACCCACCTGCAGCCGGCCACCGAGTACGAGGTGTGCCTCACTGTTTCCAACATTCACCTGCAGACCCACAAGTCGTGCGTCAACGTGACCACGCGCAGCGTCACCTTCACCCTGGACGTGTTGGACCAGAGACCTAGTGCCGCCCTGTTAGCCGTCATGGCCACCATGCTGGCCTTCCTCAGCCTGACTACTGTGGGGGTGTATGTGGCCCGGCGCTGGAAGAGGAAGAACTACCACCACTCCCTGAAGAAGTACATGCAGAagacctcctccatccccctcaatgAGCTCTACCCGCCCCTCATCAACCTATGGGAGGCAGACAGTGAGAAGGACAAGGAGGGCGGTACAGAGAGCAAGCCCTCCCCCGTGGACACCACACGCAGCTACTACATGTGGTGA

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681089 lncRNA upstream 124650 59117285 ~ 59117535 (+) True G1469761
TU1681077 lncRNA upstream 129426 59112540 ~ 59112759 (+) True G1469749
TU1680733 lncRNA upstream 155749 59086047 ~ 59086436 (+) True G1469415
TU1680728 lncRNA upstream 157746 59084225 ~ 59084439 (+) True G1469411
TU1680726 lncRNA upstream 162211 59079569 ~ 59079974 (+) True G1469409
TU1681186 lncRNA downstream 2818 59247141 ~ 59247611 (+) True G1469849
TU1681187 lncRNA downstream 3942 59248265 ~ 59248549 (+) True G1469850
TU1681188 lncRNA downstream 4882 59249205 ~ 59249504 (+) True G1469851
TU1681195 lncRNA downstream 14019 59258342 ~ 59258556 (+) False LOC110494244
TU1681198 lncRNA downstream 18828 59263151 ~ 59263383 (+) False LOC110494244
XM_036950322.1 mRNA upstream 231106 58832894 ~ 59011079 (+) False LOC110494239
XM_021569161.2 mRNA downstream 14156 59258479 ~ 59266492 (+) False LOC110494244
XM_036950330.1 mRNA downstream 38476 59282799 ~ 59438025 (+) False LOC110494246
XM_036950331.1 mRNA downstream 38476 59282799 ~ 59438025 (+) False LOC110494246
XM_036950332.1 mRNA downstream 38476 59282799 ~ 59438025 (+) False LOC110494246
XM_036950333.1 mRNA downstream 38476 59282799 ~ 59438025 (+) True LOC110494246
TU1680364 other upstream 734300 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1627885 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1694007 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 1758596 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2091842 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 857569 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1728155 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2311996 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3454180 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3466016 62710339 ~ 62711136 (+) True G1473177

Expression Profile