RNA id: XR_005037139.1


Basic Information

Item Value
RNA id XR_005037139.1
length 142
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC118940543
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59532836 ~ 59532977 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgaaatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaacatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 26499 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 36710 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 81654 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 127043 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 268307 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 79879 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 81088 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 81088 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 106229 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 110258 59643235 ~ 59643831 (+) True G1470335
XR_005037135.1 mRNA upstream 1131 59531564 ~ 59531705 (+) True LOC118940539
XR_005037251.1 mRNA upstream 2406 59530289 ~ 59530430 (+) True LOC118940665
XR_005037134.1 mRNA upstream 3678 59529017 ~ 59529158 (+) True LOC118940538
XR_005037133.1 mRNA upstream 4950 59527745 ~ 59527886 (+) True LOC118940537
XR_005037241.1 mRNA upstream 6222 59526473 ~ 59526614 (+) True LOC118940654
XR_005037262.1 mRNA downstream 1398 59534375 ~ 59534516 (+) True LOC118940676
XR_005037272.1 mRNA downstream 2937 59535914 ~ 59536055 (+) True LOC118940686
XR_005037136.1 mRNA downstream 4209 59537186 ~ 59537327 (+) True LOC118940540
XR_005037273.1 mRNA downstream 5481 59538458 ~ 59538599 (+) True LOC118940687
XR_005037274.1 mRNA downstream 6753 59539730 ~ 59539871 (+) True LOC118940688
TU1680364 other upstream 1024951 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1918536 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1984658 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2049247 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2382493 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 568915 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1439501 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2023342 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3165526 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3177362 62710339 ~ 62711136 (+) True G1473177

Expression Profile