RNA id: XR_005037144.1


Basic Information

Item Value
RNA id XR_005037144.1
length 142
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118940549
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59542273 ~ 59542414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgtttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaacatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 35936 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 46147 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 91091 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 136480 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 277744 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 70442 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 71651 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 71651 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 96792 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 100821 59643235 ~ 59643831 (+) True G1470335
XR_005037275.1 mRNA upstream 1131 59541001 ~ 59541142 (+) True LOC118940689
XR_005037274.1 mRNA upstream 2402 59539730 ~ 59539871 (+) True LOC118940688
XR_005037273.1 mRNA upstream 3674 59538458 ~ 59538599 (+) True LOC118940687
XR_005037136.1 mRNA upstream 4946 59537186 ~ 59537327 (+) True LOC118940540
XR_005037272.1 mRNA upstream 6218 59535914 ~ 59536055 (+) True LOC118940686
XR_005037276.1 mRNA downstream 1136 59543550 ~ 59543691 (+) True LOC118940690
XR_005037277.1 mRNA downstream 2412 59544826 ~ 59544967 (+) True LOC118940691
XR_005037278.1 mRNA downstream 3682 59546096 ~ 59546237 (+) True LOC118940692
XR_005037146.1 mRNA downstream 4957 59547371 ~ 59547511 (+) True LOC118940551
XR_005037279.1 mRNA downstream 6227 59548641 ~ 59548782 (+) True LOC118940693
TU1680364 other upstream 1034388 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1927973 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 1994095 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2058684 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2391930 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 559478 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1430064 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2013905 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3156089 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3167925 62710339 ~ 62711136 (+) True G1473177

Expression Profile