RNA id: TCONS_00047177


Basic Information

Item Value
RNA id TCONS_00047177
length 828
lncRNA type antisense_over
GC content 0.46
exon number 5
gene id XLOC_023442
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22053809 ~ 22066831 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGACCTTGCAATACTGATAAATCCTTCAGCGTCTGTTAGCTCGTGCCAGTGACCTCAATAGCTTAATAAGCTCAGAAGGAACCATAAGGGAGAGCAGGGTAAGCTGTGTTTATTAAAGCTGAACTCTGTGGAGGAGGAATGAGATGGAGTGTTGAGCAGTGGTGATCAGAGTCTGGAGTACCTGCCATCATCAGTGCTTTGACACACTCCACTCGACCCTGCATAGCAGCTTTCATCAGAGCGCTGAAACCATGGCAGTTCCTCTTCTCGATGTCAAGCCCAGGAAAATAGTTGAGTTTGGATTGAATTAAAGATGATTGAGTGTTCTTACCTGCCTGGGAAGCAGTGATGAGGGCTGTGTTGCCCTCGTTGTCTGACCAGTTCACATCCAGATGAGGACACTGGGAGAGAGCCATCACTACATCCACATAGCCTTGGTAGCACGCCACTATTAGTCCAGTCTGcaggGCAGTGTGAGCAGTGTCAGTGTGGAGGGGAGTGTCAGCAGCCTCTTCACACTGAAGCACAGCTGGAGGTTTAGGACTATAAATAAACCCTGGACAAGCTCATTTTACACGGCTATGACAATAGGAAGAGATGCTTCCAGTTGATGCACATCAGCCAGGTGTGTGTCATGATGTCTCTAGTTAAATGTACACAAACAACTGTATGTAAGCAATCCATTAGGTTAATTCCTCTGAAAAGTGTAAACACTGTGGCTTTGTGGTGCTTATCAAACATGTCTCTGTTTGAGAATCTTAACACCTAACATTGAACCAGTGGTGTGATCTTGGGACAAGATTGTTAAGGAATAAACCAGATACGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046337 lncRNA downstream 433553 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 684055 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 684229 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 822638 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046320 lncRNA downstream 822638 21228869 ~ 21231171 (-) True XLOC_023420
TCONS_00046366 lncRNA upstream 4390 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00046367 lncRNA upstream 4390 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046370 lncRNA upstream 57055 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 624152 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00047178 lncRNA upstream 624152 22690983 ~ 22731551 (-) False XLOC_023444
TCONS_00046363 mRNA downstream 38058 22014810 ~ 22015751 (-) True XLOC_023441
TCONS_00046362 mRNA downstream 50778 22002090 ~ 22003031 (-) True XLOC_023440
TCONS_00046361 mRNA downstream 62039 21990964 ~ 21991770 (-) True XLOC_023439
TCONS_00046360 mRNA downstream 64403 21978230 ~ 21989406 (-) True XLOC_023438
TCONS_00046356 mRNA downstream 80444 21959708 ~ 21973365 (-) False XLOC_023436
TCONS_00046364 mRNA upstream 3459 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046368 mRNA upstream 51973 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA upstream 55406 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046374 mRNA upstream 673712 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046375 mRNA upstream 674702 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046358 other downstream 85693 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 90641 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046316 other downstream 909509 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1395141 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046286 other downstream 1522223 20450027 ~ 20531586 (-) False XLOC_023407
TCONS_00046365 other upstream 4390 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046371 other upstream 242113 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 305155 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046386 other upstream 1206411 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1904225 23971056 ~ 23977285 (-) False XLOC_023458

Expression Profile

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