RNA id: XR_005037282.1


Basic Information

Item Value
RNA id XR_005037282.1
length 142
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940696
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59552456 ~ 59552597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 46119 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 56330 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 101274 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 146663 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 287927 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 60259 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 61468 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 61468 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 86609 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 90638 59643235 ~ 59643831 (+) True G1470335
XR_005037281.1 mRNA upstream 1130 59551185 ~ 59551326 (+) True LOC118940695
XR_005037280.1 mRNA upstream 2402 59549913 ~ 59550054 (+) True LOC118940694
XR_005037279.1 mRNA upstream 3674 59548641 ~ 59548782 (+) True LOC118940693
XR_005037146.1 mRNA upstream 4945 59547371 ~ 59547511 (+) True LOC118940551
XR_005037278.1 mRNA upstream 6219 59546096 ~ 59546237 (+) True LOC118940692
XR_005037283.1 mRNA downstream 2053 59554650 ~ 59554791 (+) True LOC118940697
XR_005037154.1 mRNA downstream 3316 59555913 ~ 59556053 (+) True LOC118940566
XR_005037284.1 mRNA downstream 4582 59557179 ~ 59557320 (+) True LOC118940698
XR_005037285.1 mRNA downstream 5851 59558448 ~ 59558589 (+) True LOC118940699
XR_005037286.1 mRNA downstream 7121 59559718 ~ 59559859 (+) True LOC118940700
TU1680364 other upstream 1044571 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1938156 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2004278 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2068867 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2402113 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 549295 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1419881 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 2003722 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3145906 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3157742 62710339 ~ 62711136 (+) True G1473177