RNA id: XR_005037165.1


Basic Information

Item Value
RNA id XR_005037165.1
length 141
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940577
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59560988 ~ 59561128 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaatacccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 54651 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 64862 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 109806 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 155195 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 296459 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 51728 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 52937 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 52937 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 78078 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 82107 59643235 ~ 59643831 (+) True G1470335
XR_005037286.1 mRNA upstream 1129 59559718 ~ 59559859 (+) True LOC118940700
XR_005037285.1 mRNA upstream 2399 59558448 ~ 59558589 (+) True LOC118940699
XR_005037284.1 mRNA upstream 3668 59557179 ~ 59557320 (+) True LOC118940698
XR_005037154.1 mRNA upstream 4935 59555913 ~ 59556053 (+) True LOC118940566
XR_005037283.1 mRNA upstream 6197 59554650 ~ 59554791 (+) True LOC118940697
XR_005037287.1 mRNA downstream 1129 59562257 ~ 59562398 (+) True LOC118940701
XR_005037288.1 mRNA downstream 2403 59563531 ~ 59563672 (+) True LOC118940702
XR_005037289.1 mRNA downstream 3680 59564808 ~ 59564949 (+) True LOC118940703
XR_005037290.1 mRNA downstream 4956 59566084 ~ 59566225 (+) True LOC118940704
XR_005037291.1 mRNA downstream 6229 59567357 ~ 59567498 (+) True LOC118940705
TU1680364 other upstream 1053103 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1946688 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2012810 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2077399 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2410645 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 540764 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1411350 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1995191 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3137375 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3149211 62710339 ~ 62711136 (+) True G1473177