RNA id: XR_005037289.1


Basic Information

Item Value
RNA id XR_005037289.1
length 142
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940703
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59564808 ~ 59564949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 58471 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 68682 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 113626 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 159015 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 300279 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 47907 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 49116 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 49116 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 74257 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 78286 59643235 ~ 59643831 (+) True G1470335
XR_005037288.1 mRNA upstream 1136 59563531 ~ 59563672 (+) True LOC118940702
XR_005037287.1 mRNA upstream 2410 59562257 ~ 59562398 (+) True LOC118940701
XR_005037165.1 mRNA upstream 3680 59560988 ~ 59561128 (+) True LOC118940577
XR_005037286.1 mRNA upstream 4949 59559718 ~ 59559859 (+) True LOC118940700
XR_005037285.1 mRNA upstream 6219 59558448 ~ 59558589 (+) True LOC118940699
XR_005037290.1 mRNA downstream 1135 59566084 ~ 59566225 (+) True LOC118940704
XR_005037291.1 mRNA downstream 2408 59567357 ~ 59567498 (+) True LOC118940705
XR_005037137.1 mRNA downstream 3681 59568630 ~ 59568771 (+) True LOC118940541
XR_005037292.1 mRNA downstream 4954 59569903 ~ 59570044 (+) True LOC118940706
XR_005037293.1 mRNA downstream 6227 59571176 ~ 59571317 (+) True LOC118940707
TU1680364 other upstream 1056923 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1950508 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2016630 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2081219 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2414465 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 536943 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1407529 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1991370 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3133554 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3145390 62710339 ~ 62711136 (+) True G1473177