RNA id: TCONS_00046366


Basic Information

Item Value
RNA id TCONS_00046366
length 615
lncRNA type sense_over
GC content 0.46
exon number 2
gene id XLOC_023443
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22070290 ~ 22103585 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCACATCTGAGGCTCTTTTTGTCCTCCGGCGAGCTGGGAGATAAAGACTTCACCCCTGCTGCTGCCCAGGTGGCCCATCAGAAACCTGTGCCTTCAGCACAGAAGCTGCCTGCTGGCCAGCACCTTAACCAGCACATCCACCAGCCCAGGAAATGAGCCTTCAGCCGCTCCAGAACATCACGGGCCCCCCCACATGGGGCCAGGACCACACCACCCCAAACACCTGCTCAGGTTGCCAGGGTTCTCTTGCCGTCAAACATTCCTTACGCCCCCTCCCCCTCCCTCCGTCTGTGCCTGCAAGTGTCCATTTTCGACCAGTATCATgacaaacattcattttcttgtttcgTATCTGTAAATCATCGCAACACTAAAAATCGAAGGCTTCATTGCAGATCGCCAATCAGAAACATTCTAATTCCATGGGTTCATTTCATGAGGGATTTGtggatgttttattttcttttttaattttacatgaaTCGTTCCAGAGAGATGTAAATTgtataaatcagttttgttttgtttttttgaagttGGTGAATGTTGTATATTAGGCATTAGGTACTAGGTGTGGCTATCTGATATCTGAATAAAGAGTTAATATAAAACC

Function

GO:

id name namespace
GO:0034198 cellular response to amino acid starvation biological_process
GO:0097190 apoptotic signaling pathway biological_process
GO:0010507 negative regulation of autophagy biological_process
GO:0070513 death domain binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047177 lncRNA downstream 4390 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046337 lncRNA downstream 450965 21611602 ~ 21620256 (-) True XLOC_023424
TCONS_00046855 lncRNA downstream 701467 21331016 ~ 21369754 (-) False XLOC_023421
TCONS_00046322 lncRNA downstream 701641 21368211 ~ 21369580 (-) True XLOC_023421
TCONS_00047176 lncRNA downstream 840050 21226533 ~ 21231171 (-) False XLOC_023420
TCONS_00046370 lncRNA upstream 49614 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046373 lncRNA upstream 616711 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00047178 lncRNA upstream 616711 22690983 ~ 22731551 (-) False XLOC_023444
TCONS_00047179 lncRNA upstream 654192 22728464 ~ 22732001 (-) True XLOC_023444
TCONS_00046376 lncRNA upstream 676686 22750958 ~ 22756509 (-) True XLOC_023447
TCONS_00046363 mRNA downstream 55470 22014810 ~ 22015751 (-) True XLOC_023441
TCONS_00046362 mRNA downstream 68190 22002090 ~ 22003031 (-) True XLOC_023440
TCONS_00046361 mRNA downstream 79451 21990964 ~ 21991770 (-) True XLOC_023439
TCONS_00046360 mRNA downstream 81815 21978230 ~ 21989406 (-) True XLOC_023438
TCONS_00046359 mRNA downstream 98058 21964050 ~ 21973163 (-) True XLOC_023436
TCONS_00046368 mRNA upstream 44532 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA upstream 47965 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046374 mRNA upstream 666271 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046375 mRNA upstream 667261 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046384 mRNA upstream 1167172 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046358 other downstream 103105 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 108053 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046316 other downstream 926921 21139322 ~ 21144300 (-) True XLOC_023418
TCONS_00046297 other downstream 1412553 20647475 ~ 20658668 (-) False XLOC_023409
TCONS_00046292 other downstream 1600131 20470954 ~ 20471090 (-) True XLOC_023407
TCONS_00046371 other upstream 234672 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046372 other upstream 297714 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046386 other upstream 1198970 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1896784 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 2028449 24102721 ~ 24118395 (-) False XLOC_023462

Expression Profile

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