RNA id: XR_005037299.1


Basic Information

Item Value
RNA id XR_005037299.1
length 142
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940713
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59580085 ~ 59580226 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 73748 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 83959 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 128903 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 174292 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 315556 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 32630 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 33839 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 33839 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 58980 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 63009 59643235 ~ 59643831 (+) True G1470335
XR_005037298.1 mRNA upstream 1132 59578812 ~ 59578953 (+) True LOC118940712
XR_005037297.1 mRNA upstream 2405 59577539 ~ 59577680 (+) True LOC118940711
XR_005037296.1 mRNA upstream 3678 59576266 ~ 59576407 (+) True LOC118940710
XR_005037295.1 mRNA upstream 4951 59574993 ~ 59575134 (+) True LOC118940709
XR_005037294.1 mRNA upstream 6224 59573720 ~ 59573861 (+) True LOC118940708
XR_005037300.1 mRNA downstream 1132 59581358 ~ 59581499 (+) True LOC118940714
XR_005037301.1 mRNA downstream 2405 59582631 ~ 59582772 (+) True LOC118940715
XR_005037115.1 mRNA downstream 3678 59583904 ~ 59584045 (+) True LOC118940519
XR_005037116.1 mRNA downstream 4951 59585177 ~ 59585318 (+) True LOC118940520
XR_005037138.1 mRNA downstream 6224 59586450 ~ 59586591 (+) True LOC118940542
TU1680364 other upstream 1072200 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1965785 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2031907 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2096496 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2429742 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 521666 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1392252 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1976093 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3118277 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3130113 62710339 ~ 62711136 (+) True G1473177