RNA id: XR_005037138.1


Basic Information

Item Value
RNA id XR_005037138.1
length 142
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940542
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59586450 ~ 59586591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgatatcatagcctatgaagtccatctgaggtgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 80113 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 90324 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 135268 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 180657 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 321921 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 26265 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 27474 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 27474 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 52615 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 56644 59643235 ~ 59643831 (+) True G1470335
XR_005037116.1 mRNA upstream 1132 59585177 ~ 59585318 (+) True LOC118940520
XR_005037115.1 mRNA upstream 2405 59583904 ~ 59584045 (+) True LOC118940519
XR_005037301.1 mRNA upstream 3678 59582631 ~ 59582772 (+) True LOC118940715
XR_005037300.1 mRNA upstream 4951 59581358 ~ 59581499 (+) True LOC118940714
XR_005037299.1 mRNA upstream 6224 59580085 ~ 59580226 (+) True LOC118940713
XR_005037125.1 mRNA downstream 1132 59587723 ~ 59587864 (+) True LOC118940529
XR_005037141.1 mRNA downstream 2405 59588996 ~ 59589137 (+) True LOC118940546
XR_005037117.1 mRNA downstream 3678 59590269 ~ 59590410 (+) True LOC118940521
XR_005037118.1 mRNA downstream 4951 59591542 ~ 59591683 (+) True LOC118940522
XR_005037119.1 mRNA downstream 6224 59592815 ~ 59592956 (+) True LOC118940523
TU1680364 other upstream 1078565 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1972150 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2038272 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2102861 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2436107 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 515301 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1385887 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1969728 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3111912 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3123748 62710339 ~ 62711136 (+) True G1473177