RNA id: XR_005037149.1



Basic Information


Item Value
RNA id XR_005037149.1
length 142
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC118940554
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59596633 ~ 59596774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtTCTTTcacagaggcgatatcatagcctatgaagtcaatctgaggcgtgattattgctggttgaaaacttaacccaataccctgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 90296 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 100507 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 145451 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 190840 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 332104 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 16082 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 17291 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 17291 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 42432 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 46461 59643235 ~ 59643831 (+) True G1470335
XR_005037140.1 mRNA upstream 1131 59595361 ~ 59595502 (+) True LOC118940545
XR_005037120.1 mRNA upstream 2404 59594088 ~ 59594229 (+) True LOC118940524
XR_005037119.1 mRNA upstream 3677 59592815 ~ 59592956 (+) True LOC118940523
XR_005037118.1 mRNA upstream 4950 59591542 ~ 59591683 (+) True LOC118940522
XR_005037117.1 mRNA upstream 6223 59590269 ~ 59590410 (+) True LOC118940521
XR_005037126.1 mRNA downstream 1131 59597905 ~ 59598046 (+) True LOC118940530
XR_005037127.1 mRNA downstream 2403 59599177 ~ 59599318 (+) True LOC118940531
XR_005037128.1 mRNA downstream 3675 59600449 ~ 59600590 (+) True LOC118940532
XR_005037121.1 mRNA downstream 4947 59601721 ~ 59601862 (+) True LOC118940525
XR_005037131.1 mRNA downstream 6219 59602993 ~ 59603134 (+) True LOC118940535
TU1680364 other upstream 1088748 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1982333 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2048455 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2113044 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2446290 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 505118 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1375704 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1959545 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3101729 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3113565 62710339 ~ 62711136 (+) True G1473177

Expression Profile


XR_005037149.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XR_005037149.1 Expression in each Bioproject

Bar chart with 1 bar.
XR_005037149.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 16.
End of interactive chart.