RNA id: XR_005037143.1


Basic Information

Item Value
RNA id XR_005037143.1
length 142
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940548
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59605537 ~ 59605678 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtcttatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 99200 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 109411 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 154355 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 199744 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 341008 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 7178 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 8387 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 8387 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 33528 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 37557 59643235 ~ 59643831 (+) True G1470335
XR_005037132.1 mRNA upstream 1131 59604265 ~ 59604406 (+) True LOC118940536
XR_005037131.1 mRNA upstream 2403 59602993 ~ 59603134 (+) True LOC118940535
XR_005037121.1 mRNA upstream 3675 59601721 ~ 59601862 (+) True LOC118940525
XR_005037128.1 mRNA upstream 4947 59600449 ~ 59600590 (+) True LOC118940532
XR_005037127.1 mRNA upstream 6219 59599177 ~ 59599318 (+) True LOC118940531
XR_005037129.1 mRNA downstream 1131 59606809 ~ 59606950 (+) True LOC118940533
XR_005037130.1 mRNA downstream 2403 59608081 ~ 59608222 (+) True LOC118940534
XR_005037122.1 mRNA downstream 3676 59609354 ~ 59609495 (+) True LOC118940526
XR_005037148.1 mRNA downstream 4940 59610618 ~ 59610759 (+) True LOC118940553
LOC118940558 mRNA downstream 6212 59611890 ~ 59612012 (+) True LOC118940558
TU1680364 other upstream 1097652 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1991237 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2057359 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2121948 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2455194 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 496214 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1366800 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1950641 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3092825 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3104661 62710339 ~ 62711136 (+) True G1473177

Expression Profile