RNA id: XR_005037122.1


Basic Information

Item Value
RNA id XR_005037122.1
length 142
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940526
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59609354 ~ 59609495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681656 lncRNA upstream 103017 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 113228 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 158172 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 203561 59405174 ~ 59405793 (+) True G1469871
TU1681200 lncRNA upstream 344825 59264190 ~ 59264529 (+) True LOC110494244
TU1681667 lncRNA downstream 3361 59612856 ~ 59613886 (+) True LOC118940527
TU1681669 lncRNA downstream 4570 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA downstream 4570 59614065 ~ 59618582 (+) True G1470301
TU1681700 lncRNA downstream 29711 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 33740 59643235 ~ 59643831 (+) True G1470335
XR_005037130.1 mRNA upstream 1132 59608081 ~ 59608222 (+) True LOC118940534
XR_005037129.1 mRNA upstream 2404 59606809 ~ 59606950 (+) True LOC118940533
XR_005037143.1 mRNA upstream 3676 59605537 ~ 59605678 (+) True LOC118940548
XR_005037132.1 mRNA upstream 4948 59604265 ~ 59604406 (+) True LOC118940536
XR_005037131.1 mRNA upstream 6220 59602993 ~ 59603134 (+) True LOC118940535
XR_005037148.1 mRNA downstream 1123 59610618 ~ 59610759 (+) True LOC118940553
LOC118940558 mRNA downstream 2395 59611890 ~ 59612012 (+) True LOC118940558
XR_005037123.1 mRNA downstream 3453 59612948 ~ 59613089 (+) False LOC118940527
XR_005037145.1 mRNA downstream 4820 59614315 ~ 59614456 (+) True LOC118940550
LOC118940561 mRNA downstream 6092 59615587 ~ 59615709 (+) True LOC118940561
TU1680364 other upstream 1101469 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 1995054 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2061176 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2125765 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2459011 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 492397 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1362983 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1946824 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3089008 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3100844 62710339 ~ 62711136 (+) True G1473177