RNA id: XR_005037124.1


Basic Information

Item Value
RNA id XR_005037124.1
length 142
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC118940528
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59616645 ~ 59616786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctttcgcagaggcgatatcatagcctatgaagtccatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtctcatgtgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681667 lncRNA upstream 2759 59612856 ~ 59613886 (+) True LOC118940527
TU1681656 lncRNA upstream 110308 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 120519 59495827 ~ 59496126 (+) True G1470277
TU1681336 lncRNA upstream 165463 59450762 ~ 59451182 (+) True G1469990
TU1681211 lncRNA upstream 210852 59405174 ~ 59405793 (+) True G1469871
TU1681700 lncRNA downstream 22420 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 26449 59643235 ~ 59643831 (+) True G1470335
TU1681710 lncRNA downstream 30954 59647740 ~ 59647996 (+) True G1470341
TU1681752 lncRNA downstream 99823 59716609 ~ 59718373 (+) True G1470383
TU1681819 lncRNA downstream 293622 59910408 ~ 59911460 (+) True G1470431
LOC118940561 mRNA upstream 936 59615587 ~ 59615709 (+) True LOC118940561
XR_005037145.1 mRNA upstream 2189 59614315 ~ 59614456 (+) True LOC118940550
XR_005037123.1 mRNA upstream 3556 59612948 ~ 59613089 (+) False LOC118940527
LOC118940558 mRNA upstream 4633 59611890 ~ 59612012 (+) True LOC118940558
XR_005037148.1 mRNA upstream 5886 59610618 ~ 59610759 (+) True LOC118940553
XR_005037142.1 mRNA downstream 1131 59617917 ~ 59618058 (+) True LOC118940547
LOC118940559 mRNA downstream 2403 59619189 ~ 59619311 (+) True LOC118940559
LOC118940560 mRNA downstream 3461 59620247 ~ 59620369 (+) True LOC118940560
LOC118940556 mRNA downstream 4518 59621304 ~ 59621436 (+) True LOC118940556
LOC118940557 mRNA downstream 5575 59622361 ~ 59622486 (+) True LOC118940557
TU1680364 other upstream 1108760 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2002345 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2068467 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2133056 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2466302 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 485106 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1355692 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1939533 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3081717 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3093553 62710339 ~ 62711136 (+) True G1473177