RNA id: LOC118940559



Basic Information


Item Value
RNA id LOC118940559
length 123
RNA type mRNA
GC content 0.46
exon number 1
gene id LOC118940559
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59619189 ~ 59619311 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attctttcgcagaggcgatatcatagcctatgaagtccatctgaggtgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatattGTCAGCCTTGgcagcgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1681669 lncRNA upstream 607 59614065 ~ 59618582 (+) False G1470301
TU1681670 lncRNA upstream 607 59614065 ~ 59618582 (+) True G1470301
TU1681667 lncRNA upstream 5303 59612856 ~ 59613886 (+) True LOC118940527
TU1681656 lncRNA upstream 112852 59506034 ~ 59506337 (+) True G1470290
TU1681643 lncRNA upstream 123063 59495827 ~ 59496126 (+) True G1470277
TU1681700 lncRNA downstream 19895 59639206 ~ 59639439 (+) True G1470331
TU1681704 lncRNA downstream 23924 59643235 ~ 59643831 (+) True G1470335
TU1681710 lncRNA downstream 28429 59647740 ~ 59647996 (+) True G1470341
TU1681752 lncRNA downstream 97298 59716609 ~ 59718373 (+) True G1470383
TU1681819 lncRNA downstream 291097 59910408 ~ 59911460 (+) True G1470431
XR_005037142.1 mRNA upstream 1131 59617917 ~ 59618058 (+) True LOC118940547
XR_005037124.1 mRNA upstream 2403 59616645 ~ 59616786 (+) True LOC118940528
LOC118940561 mRNA upstream 3480 59615587 ~ 59615709 (+) True LOC118940561
XR_005037145.1 mRNA upstream 4733 59614315 ~ 59614456 (+) True LOC118940550
XR_005037123.1 mRNA upstream 6100 59612948 ~ 59613089 (+) False LOC118940527
LOC118940560 mRNA downstream 936 59620247 ~ 59620369 (+) True LOC118940560
LOC118940556 mRNA downstream 1993 59621304 ~ 59621436 (+) True LOC118940556
LOC118940557 mRNA downstream 3050 59622361 ~ 59622486 (+) True LOC118940557
XM_021569176.2 mRNA downstream 38490 59657801 ~ 59670107 (+) True LOC110494250
XM_021569177.2 mRNA downstream 237914 59857225 ~ 59887042 (+) False LOC110494251
TU1680364 other upstream 1111304 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2004889 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2071011 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2135600 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2468846 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 482581 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1353167 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1937008 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 3079192 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 3091028 62710339 ~ 62711136 (+) True G1473177