RNA id: XM_021569178.2


Basic Information

Item Value
RNA id XM_021569178.2
length 1649
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110494251
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59857225 ~ 59887042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggttgccagCAGTCATAAAAAAATACACAGAAGAAGACGAAGAGCTTGAAACAAAACATTCTTTCGACTGTATCAACTTCTGCAGCTCAACATACGCAAAATGACTTGTTTTATGAATTTCTTTACGTTTATTTTCAAGGTAGTAACGTTGCCACTACAATTAATGGAAGTGGTTGGCATATATGGCATCTACAAGCGTTTCTTTCCATTTCTAATTTACAAGATATCTTTCACCTACAACAAGAAAATGAACGACAAAAAGAAGGATCTTTTCAGCAATCTCTCAGAGTTCACCAAAGGCAATGGCCCGCTTCGCATTTTGGAGATCGGTTGCGGAAGCGGGGCTAACTTTGAATTCTACCCGTCTGGTTGCAAGGTGGTTTGCACCGACCCCAATCCTCACTTCGAGAAGTATCTACAAAAAAGTATGGCTGTCAATGATCACCTAACATTTGAAAGATTTGTGGTCGCTTCCGGAGAGGACATGGGGGCAGTGAAAGATGACTCTGTGGACGTTGTCGTCTGCACGCTGGTGCTGTGTTCTGTCAACAACATACCGCGAACATTGCAGGAGGCGCATCGCATATTGAGGCCTcataaACCTGCTCTCCGCCCCCAGTACAAGGAGATGAACGAGGGTGAACAACCAACATTTCAGCTTCAATtgtctggagcctggtgttgttgcAGCCAAGGCACTTTCACTCAGCtgggaccaggtttcagctgctgtgCAACATTGATGTCCTTCCTCCCAGAGATGTGCAACCATCCCCCATGCATGTATTTTTTAGAAAATCAGGACTTTTGCACAGAAAAGGCTATGGGCATTACATGTCCTGCTCCAATGCACAGGACAGAAAtatgctattttcaggtctctccaaagatgttagaccgggttcaagtccgggctctggctgggccactcaaggacattcagagacttgtcatgCCTGTGTGCTTagcgtcattgtcctgttggaaggtgaaccttctacCCAGtttcaggtcctgagcgctctggagcaggtttacatcaaggatctctgtacttttctctgttcatctttgccatGATCCGGAATAGTCTTCCAGTCCgtgcccctgaaaaacatccccacagcatgatgctgccaccactattctcccatcgccacatagaaactctggagctgaccaaggctcttctccacCGATTACCGTTTAGATTTTTTTAATTCATTTGctaaaatttccaaaaaactgttttcgctttgtcattgggtattgtgtgtagattgaggaggataaatatttattcaatctattttagaataaggctgcaaggtaacaaaatgtggaaaagtaaaagggtctgaattatttctgaatgcactgtatgatataccattttgaagCTCTGAGTCGGTACTTTTACCTAATGTAAAAAGTAACATTTAAAATGTTGGAACGTAACACCAAAAAGAGAAGGTGGTGGGGTCACAAATCAGGTGTTAAACTAGGTGAAAAGGTGACTTGATCACCACCAATATTCCAGTCCATCACCAGCATAGACCTCTGCAGTCTGCACACACTTCTTTCCACCACTACATGGACAGGTTAAGATGGTGTTTAATACAACAGCGCCGTGGCAGGTACCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681752 lncRNA upstream 138852 59716609 ~ 59718373 (+) True G1470383
TU1681710 lncRNA upstream 209229 59647740 ~ 59647996 (+) True G1470341
TU1681704 lncRNA upstream 213394 59643235 ~ 59643831 (+) True G1470335
TU1681700 lncRNA upstream 217786 59639206 ~ 59639439 (+) True G1470331
TU1681670 lncRNA upstream 238643 59614065 ~ 59618582 (+) True G1470301
TU1681819 lncRNA downstream 23366 59910408 ~ 59911460 (+) True G1470431
TU1681921 lncRNA downstream 93018 59980060 ~ 59980665 (+) True G1470533
TU1681929 lncRNA downstream 103962 59991004 ~ 59993399 (+) False G1470538
TU1681930 lncRNA downstream 103962 59991004 ~ 59993399 (+) True G1470538
TU1681941 lncRNA downstream 113020 60000062 ~ 60000432 (+) True G1470549
XM_021569176.2 mRNA upstream 187118 59657801 ~ 59670107 (+) True LOC110494250
LOC118940557 mRNA upstream 234739 59622361 ~ 59622486 (+) True LOC118940557
LOC118940556 mRNA upstream 235789 59621304 ~ 59621436 (+) True LOC118940556
LOC118940560 mRNA upstream 236856 59620247 ~ 59620369 (+) True LOC118940560
LOC118940559 mRNA upstream 237914 59619189 ~ 59619311 (+) True LOC118940559
XM_036950349.1 mRNA downstream 176208 60063250 ~ 60078437 (+) False LOC110494255
XM_036950350.1 mRNA downstream 176208 60063250 ~ 60078437 (+) True LOC110494255
XM_021569189.2 mRNA downstream 191708 60078750 ~ 60095370 (+) True LOC110494256
XM_021569193.2 mRNA downstream 357743 60244785 ~ 60247910 (+) False LOC110494259
XM_021569192.2 mRNA downstream 357875 60244917 ~ 60247910 (+) False LOC110494259
TU1680364 other upstream 1349340 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2242925 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2309047 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2373636 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2706882 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 214850 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 1085436 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1669277 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2811461 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2823297 62710339 ~ 62711136 (+) True G1473177

Expression Profile