RNA id: TU1682386


Basic Information

Item Value
RNA id TU1682386
length 2841
RNA type TUCP
GC content 0.45
exon number 6
gene id LOC110494253
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59990975 ~ 59999740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCAGCCCCGCTGTCCCCCAGAGACATGAGCAGAGCCAGCAGCCCTCGCAGCATTCTGACACCCCCTCACCTGCACAGCCACAGCAAACCAGCAGTGGCTCCTCCTCTCCATTTGGGTATAGTCTACATTCAGAGGACATGATGGTATCCCCGGCCCAGCCCACCGGGGGTAGGAGGCGGCGGGGTGCGGAGGCCGACCCAGATGAGAGAAGGCAGCGCTTCCTGGAGAGGAACAGGGCGGCGGCGTCTCGCTGCCGACAGAAACGCAAGGTTTGGGTTGGCTCACTGGAAAGGAAGGCAGAGGACCTGGCTACCATGAACGTCTCTTTGACCAATGAAGTGGGTCTGCTGAGGAACGAGGTGACACAACTGAAACAGCTGCTACTGGCCCACAAAGACTGCCCTGTCACTGCCATGCAGAAGGCGGCTGCCTACTTAGGGtgaatgtttctctctctctctctgtagctgcaggaggagaggagagctccaGGGATCCCCCCTCCGAGCCTACGGGCTCCACAGCCTTGGCCATCCAGCACGGGCCTTCGGCCCCTGTCCCCAGCCCTGGTGCCATCACCGTCAACGGGCTGAGCGTATGCGCGGCTGAGGCAGTGGCCATGTCGGTCCTGGCCGGGATGGGGGCGGCCCACCAGGGAGGGGTCCTCATGGCGCCACAGCCTCAGCCCGCCCCCAGATGATGCGCAGGGAGCCAATAAGAACATTAGGAGGCCGGACTGGTACAATTATGTGAGAGATTGAAAGGGACCTGATTTGAAATCTGAAATCCCACCAGTTGATAATAGAAGGGGTGGGGTGAGAAGTACTGTCTCCAACCTATGCTCAGACCTTGGATACAGTGGCAGCCAGGAAAGGATGTTGGGAGTTGACATCCTGTCAAAGCCACACAAACCCCCCACCctaccccccaaacacacacacatgctcgctCACAGCCAATGATAATCACTGAACATACCGAGTCGTCCCGCCCCTTTTGCCCCTTTTCTGATGGATCCCTGCTTGGAAGCACTGTCATTGCGTATGTACATACTCACACCCCGTGACATACACACACTCGATCACTGAATGTAGTGTGTTTTTGTCTATTTGCAACTCTCCCCTGTCTACAGTGTAAATCTCTCCTTACATATTTATCTTCTTCATGCAGCTGTTAATCCATGGGGAAACTCTTTTTAGGGCTGAATAAGCGTGAGAtattgttttccctttgtcatggAGTGAGCCAAAGTTTGAGTATATTCAATGTCtggcctttttaaaaatgtattattttttttttttttataggaaTTCTGCATTCTGACAATGTGTATGAAACCCTTATTGACTGCATGGATATTAGAGGAGACTGATGAAGACCACTGTCTGTGTGCTGGTGTCTGCTCATATTATTGCTGGTTTTTATCATACTGCTTTTCTCTCCCACTTTTTAAAGTGATATCAAATGACTGATGCAAACAATGACAATGTCCTAATATAACACTTGAAATGGTTAGGTTTTAGATTATACTTTATGTAGTAATCAACAAACTTTTCATTAGATTTATAAATCATTTACCCAGGCTAAGTTGAGgaaaaagtagtgcaatatatttttatattcaaaaCAAATATTAATGTTCCTGCATTTAGCTAAAATGTGTGTAGTGAATACAGTGGTAGAATGGTTTGTTCTAATTCAATGAAAACCAATTACATTCTAAATGATAAGAGAAAATGTAAACCTACAACATATTCTTGAATGCAAATCTCGATTAGGGGACGTCTATATGAAGATCATGTCCTACTCTCGGGTTAAAGATCATGTCCTACTCTCGGGTGCTTTCCAACATTTAAAAAACTATACTGTCTTTTGGAGTATATCACTTTTGTAGGACACGTCACTGAAATATTTGTTATGAAATGTCATTGAGTgatgtcttttttttttcttcacattttgtgtTGAGGAATACCTTGTTTGTTTCATCTTTTTTTAACATGTCAATGCTCTATTCATCATTTTGTTATTGCTGTAACTGAACCCTGCGTCACGTTACCTTTCCCCTCGTGTTCTGTCAAGAGGATGGATATGTCTGTCTTCAACAGTGAACCCAGGGTGTAACCTCCCACAAACTATTATGGAATTTGTCTCCAATCCGTCGAGAGGGTGTTTTTGCCCAAAATAATTACACCTCAAGGCGGGGGAAATTTAACTTGTGTATAGTCTCAACTAATAAAAGATCTCCGGCAAAATAAATAAGTTACTGGCAACAAGGGGTTTAGGTTAATCTTTTTCATGCTTAGTATCTAAGTGCCTATCCCCTTGGTATAGAGCTCCATGACAGTAGGAGCAGAAGCTGTCTGATGTGCTCAGGGATTATAGGATGGGCTGGTGGCATACGTGTACACAATAAGCACAGGAAACGAGAAGGCTTCTGTATGTCAGAGAGCGAGATAGACCCTGCGTGTGACTATAGAGCGTAAGGGGAGAATCCTAACTTCCACTAAATAGATTTTTCACTAAGTCTCCCACTGACATGAATGCATGACTAAGTGAAAATTGACTTGTGGAATTTAGAATTAGCCTCTAAAATTGTGTTCCAGACATTTGTGTGATGTTAGTATGTTCATCTTGTCATGAAATTGCAATAGTTGACTGACCGATATTATGGACCATAGTTTCATAAACAGTAGCCCAGTGTGTGTTCAGTCAGTGATGTGTGAAATGCTCATAAACATTCATTTTCCATACAGCAGGATTCACCAACTGGTGGGCCGAATTTAAAAtgtgggtggttttatttggccccaaAAGTTTTTTTGATTGTTCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1682389 lncRNA downstream 79530 59910406 ~ 59911445 (-) True G1470937
TU1682382 lncRNA downstream 80684 59905729 ~ 59910291 (-) False G1470934
TU1682383 lncRNA downstream 80684 59905729 ~ 59910291 (-) True G1470934
TU1682247 lncRNA downstream 284678 59706044 ~ 59706297 (-) True G1470824
TU1682228 lncRNA downstream 310003 59680752 ~ 59680972 (-) True G1470805
TU1682378 lncRNA upstream 6316 60002642 ~ 60004577 (-) True G1470932
TU1682451 lncRNA upstream 33800 60030126 ~ 60030325 (-) True G1470998
TU1682462 lncRNA upstream 53984 60050310 ~ 60050549 (-) True G1471009
TU1682469 lncRNA upstream 61487 60057813 ~ 60058023 (-) True G1471016
TU1682484 lncRNA upstream 101519 60097845 ~ 60098185 (-) True G1471029
XM_036950344.1 mRNA downstream 150 59911534 ~ 59990825 (-) False LOC110493230
XM_036950346.1 mRNA downstream 150 59911534 ~ 59990825 (-) False LOC110493230
XM_036950347.1 mRNA downstream 150 59911534 ~ 59990825 (-) False LOC110493230
XM_036950345.1 mRNA downstream 150 59911924 ~ 59990825 (-) True LOC110493230
XM_036947885.1 mRNA downstream 85786 59878435 ~ 59905189 (-) True atf1
XM_021569186.2 mRNA upstream 11678 60008004 ~ 60028650 (-) False LOC110494254
XM_021569187.2 mRNA upstream 11678 60008004 ~ 60028651 (-) True LOC110494254
XM_036948424.1 mRNA upstream 107707 60104033 ~ 60110249 (-) False LOC110494257
XM_036948425.1 mRNA upstream 195399 60191725 ~ 60193447 (-) True LOC118940153
XM_021569191.2 mRNA upstream 201294 60197620 ~ 60223564 (-) True LOC110494258
TU1682225 other downstream 314281 59674541 ~ 59676694 (-) True G1470802
TU1678904 other downstream 2758268 57229507 ~ 57232707 (-) False hig1a
TU1678906 other downstream 2758268 57229507 ~ 57232707 (-) True hig1a
TU1678489 other downstream 3490650 56494856 ~ 56500325 (-) False elmo2
TU1682489 other upstream 110343 60106669 ~ 60107187 (-) True LOC110494257
TU1682687 other upstream 379420 60375746 ~ 60376592 (-) False G1471219
TU1683060 other upstream 641854 60638180 ~ 60639335 (-) False G1471564
TU1685283 other upstream 2250053 62246379 ~ 62250638 (-) False ccdc174
TU1685284 other upstream 2250053 62246379 ~ 62250638 (-) False ccdc174

Expression Profile

TU1682386 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU1682386 Expression in each Bioproject

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TU1682386 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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