RNA id: XM_021569186.2


Basic Information

Item Value
RNA id XM_021569186.2
length 3457
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC110494254
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60008004 ~ 60028651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACcatcccacttggttatgaaagCAGCATGAGACCCACTAGAGACAAGGTCAAGTTGTATGTTGGTTCAACACGCGGAGAATTGTCAGTGGCGCTTAGCTAAACTTCGAAAGGTGTAACGTTATGCCGCCATGAGAACGATTTGGTTTGTAACCGATAAATAATAGACGATTGATTATTCTATTTCCTTTTTATTGTGCCATTTGCTCCATTGATTGCAATCCGCTACAAAACATCGCAAGTTGAGCTGCGAGTGATAGCTTTCActtggggggtggggtgggattgTCAGGAGCGGTCCGGATGAGTTCGGAACAGTGTCTGGCTCTACAGCAGAAGGAGGTCAAGTCGGGATCGGACGAACGTGTGCAAGGGGAGATAATATCGAAAGATCAAGGCGGAATGGTAACCACAAAGGGAGCAGGTCTGAACCCCAATGCCAAAGTCTGGCAGGAGATCTCTGCGCCCCAGAGCCAAGTCCCAGATGAGGGCATAGAGGGCCCCTACTTGCTCCAGATGACCCCTAACTCTGCTGATGTCACTGAGGgTTACTCAGAGGTCCCTCCTACTGGGGCTAAGGGGTATGGCATGGGGTACTCGGACCCATCCTTGGACAGCAGTGCCCCTGCACCCACAGAGGGGGTATTGAACGGCATGGACCCCCCTGAGCTGGGATACCCTCTCTATGACCCTGTGACTGGTTCAGCAGTGGAGGAAAAGCAGCCGCTCTTAGAGGTGAGCATCAGAGAGTGTCTGAAGAAACAGATGGAGTTCTGCTTCTCCAGAGAGAATCTGTCCAAGGACTTGTACCTGATGTCCCAGATGGACAGTGACCAGTTTGTCCCCATCTGGACCATCGCCAGCATGGAGGGCGTCAAGGTTCTCACCACTGACATGGACCTGATTCTGGAGGTGCTACGAGCCTCGCCCATGGTGCAAGTTGACGAGAGTGGGAAAAAGGTTCGGCCCAACCACAAGCGCTGCATCATCATTCTGAGGGAGGTGCCCGAGACCACACCGGTGGAGGAAGTGGAGACCCTCTTTAAGAATGAAAACTGCCCTGAAGTGCTTAGTGTTGAATTTGCGGCCAATAACAACTGGTACATCACGTTCCGGTCGGACACTGATGCACAGCAGGCCCACAGATATCTAAGGGAAGAAGTGAAAACATTTCAGGGAAAACCCATCATGGCTCGTATCAAGGCCATCAACACATTCTTTGCAAAGAATGGCTACCGTAGCGTACTGGACTCCAGTGTGTACAGCCAGCAGGGCCAGTCTCAGTCCCAGTACACCTCTACACACCACTATATGCAGCAGGTGTTCAGCCCCCAGCAGCAgtaccctctctaccccctggTGCCCCCCACCTGGAACCCATCGCCTGCCCCTTATTTCGAGACCCCACTGGCCCCGTTCCCCAACAGTGGCTTTGTGAATGGCTTCAGCGCCCCTGGGAACTACAAGACTGGCACCTGTCCCCTGGGCCTCGGACGATCGCCCTTCAACAGCAACCGTGTCCCCCTCTATTCCAGAAAGTATGTAATCAATGCCTTCAGGAACCATGTGAAGAGCCAGCCCCAGCCATGTGATGAAACCCTACCTCCATCTGTGACCCCCGTACCCCCCCTGGTGGATGGCCTGTCTGGCCCCTCCAGCCCTCAGCCACCCCGCATGACTGGGGCTCCCCTGGTTAGCACCCCTGAACCTGGCCCTGCTCTCACCTCTTACTGCCTCAGGGACACCCTCCCACTGGCTTCAGAGGGGATGTCTAACGGAGACCTGGGCATTGCTGGCAGAAGCAGGAGAGGCAGCTACCGAGGGATGCGCAGAAGGAGAGAGGACGAGCGGCTCATGAGGCCCATCCCTCTGAGCGAGGTTAAGGTTCCACAGCCCAAGTTTGACTTGGCAACCTCCAACTTCCCTCCGTTGCCTGGGTGTACGGTCAGCATGCAGGGAGAAGAGCCCGTGCTGGAGACGCGCATGTCTGACGTGGTGCGGGGTGTTAAGGTGGTGACCAGTGACAAACCTGAGGTGAATAAGGAGTCTGTGGCCCCTCCTGTTAGTACCCAGGAGGGAACTGGGAGCGTGCCCAGTCCTGTCATGCCAGCCCTCAAACCCCCCACCCCTCTAGTTGTGCAGCCCCCTGTTCCAAGTGTTGCTCACCCGGTAGAGAAGCCTGAGCCTCATGTCCAAAGGGAGGCTGCTAGAACCCCCACACCACCCTCTTCTTTGCCAACCCCATCACAGCCCGCTGCTGCTACCAAACCCACCCCTATCCCCACCAGCAGTCAGTCCATCTCCACGACAACACCAGTCCCCGCTGCCCCCACTACCGCACCGGAGCCAAGGAAGCTGAGCTATGCTGAGATGTGCAAGCGGCCAGCCACCCAGCTCCCAGCCCCCAGCACCCCCAACCCTCCCATCACCTCTGCCAGCCAACCCCTGCAGGAGCTTCGGGTCAACAAGGCGGACGAGCCTGCCGCCTCCAGCAGCAGCAATGGCGATAGGCCAGAGAAACCTGAGGGGTCTGGAGAAGGCCTGTCCCTTCGTGACCCCCTGGGCACATACCGTTCGGGTAACGGCCCTTCCCGATCCGGAGGGATGGGCCTAAAGTACCGGGATCAACAGCGTGGTGCCTCTATGAGACGACGGATCTCCCCCCACAGCTGGGCTAGAGGGAGTGGGAAGGAACAGAACATTCCACCCCGGTCGCCGAAGTAGTTTAAACCACAACCAATAGACTAAAAGGAAAACAAACAGATCTATGTTAAGACagaaatatatgaatatatattatTGGATGAAAGAACATGTGCGTTCTTAATCTAGAAGACCCTCCTGGAGCTCAGTCGGACACACTGACCTTTGTTTGGGAAAACACTGAAAGCGGTAATCATTTTAAGTGGGGGTGAACATGAGTGTCACAAAACAAACTGAAGGACTTGTTTGAAAGAACAGTGAGATGCTGACATGTGGCCTCACCTTGGTTAGCTTGAAGAATGGGCCCTCCGCTAAATCGATGAATTTTATTTTTATGTGAAAGTGGGGTTTGAGAGAGGGGGGACAAATGTATGGTAAGTAAAGCCTTGTATCTCAAAAATACCAGTAGTTgcaaaataaaaaacaacagttGAGCTGTTAGCAAATCTAGTTTATATGCAACTAAGCAAAAGATGTGGATATCCACCGATATGACAACTGAGTTGATACTACTTCCTTATAAAAAATTATATTGAGGGAGGGGTTAGTAGGGTATTGTTCATTAACTGTGTGGAAATGTGCTTTTATGAAGGTTGGAAGCAAGAGATGGCCACATGGTTCAGGAGTTGTTCTGAGAGTTGGGAAGCCTGTCAAGTCAAGCTGCACATTCATTTAGGTGAAGAAACCGTCTTCGACATGTCTGCTTTTAGtctggaatttaaaaaaaaagctttAACCAGTGGGGAAATGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1682378 lncRNA downstream 3427 60002642 ~ 60004577 (-) True G1470932
TU1682389 lncRNA downstream 96559 59910406 ~ 59911445 (-) True G1470937
TU1682382 lncRNA downstream 97713 59905729 ~ 59910291 (-) False G1470934
TU1682383 lncRNA downstream 97713 59905729 ~ 59910291 (-) True G1470934
TU1682247 lncRNA downstream 301707 59706044 ~ 59706297 (-) True G1470824
TU1682451 lncRNA upstream 1476 60030126 ~ 60030325 (-) True G1470998
TU1682462 lncRNA upstream 21660 60050310 ~ 60050549 (-) True G1471009
TU1682469 lncRNA upstream 29163 60057813 ~ 60058023 (-) True G1471016
TU1682484 lncRNA upstream 69195 60097845 ~ 60098185 (-) True G1471029
TU1682493 lncRNA upstream 85561 60114211 ~ 60114423 (-) True G1471038
XM_021569180.2 mRNA downstream 8264 59991520 ~ 59999740 (-) False LOC110494253
XM_021569181.2 mRNA downstream 8264 59991520 ~ 59999740 (-) False LOC110494253
XM_021569185.2 mRNA downstream 8264 59993268 ~ 59999740 (-) False LOC110494253
XM_036950348.1 mRNA downstream 8470 59991520 ~ 59999534 (-) False LOC110494253
XM_036950344.1 mRNA downstream 17179 59911534 ~ 59990825 (-) False LOC110493230
XM_036948424.1 mRNA upstream 75383 60104033 ~ 60110249 (-) False LOC110494257
XM_036948425.1 mRNA upstream 163075 60191725 ~ 60193447 (-) True LOC118940153
XM_021569191.2 mRNA upstream 168970 60197620 ~ 60223564 (-) True LOC110494258
XM_036950351.1 mRNA upstream 207225 60235875 ~ 60244681 (-) False thumpd3
XM_021569194.2 mRNA upstream 207225 60235875 ~ 60244818 (-) True thumpd3
TU1682385 other downstream 11678 59990975 ~ 59996326 (-) False LOC110494253
TU1682386 other downstream 11678 59990975 ~ 59996326 (-) True LOC110494253
TU1682225 other downstream 331310 59674541 ~ 59676694 (-) True G1470802
TU1678904 other downstream 2775297 57229507 ~ 57232707 (-) False hig1a
TU1678906 other downstream 2775297 57229507 ~ 57232707 (-) True hig1a
TU1682489 other upstream 78019 60106669 ~ 60107187 (-) True LOC110494257
TU1682687 other upstream 347096 60375746 ~ 60376592 (-) False G1471219
TU1683060 other upstream 609530 60638180 ~ 60639335 (-) False G1471564
TU1685283 other upstream 2217729 62246379 ~ 62250638 (-) False ccdc174
TU1685284 other upstream 2217729 62246379 ~ 62250638 (-) False ccdc174

Expression Profile