RNA id: XM_021569189.2


Basic Information

Item Value
RNA id XM_021569189.2
length 3838
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC110494256
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60078750 ~ 60095370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTTATTTTGCGCATGCCCTGTACACATACCGCGCAGTCAGTGGCTTGAGATTTCTTTAAACAAGCTAACGTTAGTCAGGCAGCAGCGAATCATACAACAGCACATACCGGCTGAGAGACAACTCAAAGCAAGATAAGGGCACCATGGAGCTAAATGATGGAAACCTTCAGACCCTCACAGAATTTATGCGCAAAACTCTGGACCCAGATCCATCCGTAAGACGTCCAGCTGAAAAATTTCTTGAGTCAGTTGAAGGGAACCAGAATTACCCAATATTGCTGCTTACATTGTTGGAGAAATCCCAAGACAATGTGATCCGGGTGTGTGCAGCTGTCACCTTCAAAAATTACATCAAGAGGAACTGGCGCATAATTGAAGATGAACCCAACAAAATCTCAGATCCGGACCGAACCACGATCAAGGCCAACATTGTAAATTTGATGCTGAGCAGCCCTGAACAGATTCAGAAACAGTTGAGTGATGCCATCAGCATCATCGGTAGAGAGGACTTCCCTCAGAAATGGCCGgacctcctgacagagatggtgaccCGCTTCCAGAGCGGAGACTTCCACATCATTAACGGAGTGCTCCGAACCGCACACTCACTTTTCAAGAGGTATCGACATGAGTTTAAGTCAAATGAGCTATGGCTGGAGATTAAGCTGGTGTTGGACACATTTGCGAATCCACTGACTGAACTCTTCAAGGCCACCATTGAGCTGTGTCAGACCCATGCGACGGACATCAATGCTTTGAAGATCCTCTTCTCGTCCCTTACTCTGATCTCAAAGCTTTTCTACAGTCTCAACTTTCAGGACCTTCCAGAGTTATTTGAGGACAACATGGAGACCTGGATGTCTAATTTCCATAACTTGTTGACCTTGGATAACAAGCTACTACAAACAGATGATGAAGAGGAGGCAGGTCTTCTGGAGCTGCTCAAGTCTCAGATCTGTGACAACGCTGCTCTGTACGCCCAGAAGTACGATGAAGAATTCCAGCCTTACCTGCCTCGGTTTGTCACCGCTATCTGGAACCTGCTGGTCTCCACTGGCCAGGAGGTCAAGTATGACCTGCTTGTGAGCAATGCTATTCAGTTCCTGGCATCTGTGTGTGAAAGGCCCCATTACAAGCATCTGTTTGAGGACCAGAACACACTCACCAGCATCTGTGAGAAGGTCATTGTGCCCAACATGGAGTTCAGAAGCGCTGATGAGGAGGCCTTTGAGGATAACTCTGAGGAATATATCCGAAGAGATCTTGAAGGAtcagACATAGACACTCGGCGCAGGGCTGCTTGTGACTTGGTGAGAGGCCTGTGTAAGTTCTTTGAGGGCCCGGTCACAGCCATCTTTTCTGGCTATGTCAACTCCATGCTTGGGGAGTATGCCAAGAATCCAGGGGTGAACTGGAAGCACAAAGACGCTGCCATCTACCTGGTCACATCTCTGGCCTCAAAAGCCCAGACAGCAAAGCATGGTATCACGCAAGCTAACGAGTTGGTGAACCTTACAGAATTCTTTGTGAACCACATTCTCACAGACCTCAAATCCCAGAACGTCAATGAGTTCCCAGTGTTGAAGGCTGATGCCATCAAATATGTCATGATCTTCAGGAGTCAGCTGCCCAAAGAGCAGCTGCTGCAGGCTGTCCCTCTGCTGGTGGCCCACCTGCAGGCAGAGAGCACGGTAGAGCACACCTACGCTGCCCATGCACTGGAGAGACTCTTCACCATGAGGGGCCCCAACAACTCTACTCTTATCACTCCTGCAGAGATGgcccccttcacagaacagctgcTAAACAACCTGTTCAAGGCTCTGGCTCTGCCTGGCTCCTCAGAGAATGAATATATCATGAAAGCCATCATGCGCAGCTTCTCCCTCCTGCAGGAGGCCATCGTGTCTTACATCCCCACTCTGATTGGCCAGCTCACTCACAAGCTCCTGCTGGTCAGCAGGAACCCCAGCAAGCCTCACTTTAACCACTACCTGTTTGAGTCCCTGTGCCTGTCCATCCGTATCACCTGCAAGGCCAACACAACTACTGTGGGCAGCTTCGAGGAGGCCCTCTTCCCAGTCTTCACTGAGATCCTACAGAATGATGTACAGGAGTTTGTGCCGTACGTGTTCCAGGTGATGTCCCTTCTTCTGGAGATCCACACCAGCTCCATCCCCAACTCCTACATggcccttttcccccacctgctGCAGCCTGTACTGTGGGAACGCACTGGCAACATTCCCCCTCTGGTGCGCCTGCTTCAAGCATATCTGGAGAAGGGGGGAGCCACCATAGCCAGCTCTGCTGCTGACAAAATACCTGGCCTGCTAGGAGTCTTCCAGAAGCTCATAGCCTCCAAGGCCAATGACCACCAAGGTTTCTACCTGATGAACAGTATCATAGAGCACATGCCGACGGAGTCCATTGTTCAGTACAGGAAACAGATCTTCATCCTGCTCTTCCAGAGACTGCAGAGCTCCAAAACCACCAAGTTCATCAAGAGCTTCATGGTGTTTATCAATCTTTATGGTGTCAAGTACGGAGCCATTGCTCTGCAGGAGATTTTTGACAGCATACAGCCAAAGATGTTTGGCATGGTGCTGGAGAAGATAGTCATTCCAGAGGTGCAGAAAGTGTCTGGACCAGTGGAGAAGAAGATCTGTGCTGTGGGCATCACCAAGATCCTCACTGAGTGCCCTGCCATGATAGATACTGAGTACACCAAACTCTGGACCCCCCTGCTTCAGGCCCTCATTGGGCTATTTGAGCTACCAGAGGATGATAGCATCCCTGATGACGAGCACTTCATTGACATAGAGGACACACCCGGTTACCAGACTGCTTTCTCCCAGCTGGCCTTTGCTGGGAAGAAGGAGCACGACCCCATCGGCGATGTGGTCAGCAACCCCAAGATCCTGCTGGCGCAGTCTCTCCACAAGCTCTCTACTGCATGTCCCGGACGGGTACCCTCTATGCTGAGCACCAGCCTGAACGCTGAGGCCCTCCAGTACCTGCAGGGTTACCTGCAGGCTGCCTCTGTACAGCTGGTGTGAAGATGGACACAGAAGCTTCCTCACTGACGCATAAGACACCACACTGCACAATAACTGGGCACTGTCGCCCATGGGCCACACTGGGACTGACTCATCAGGATTGAATGGACAAAACGAAGACTGATCAATTGACTTCTCATGGTGGATACTTGGACAATGGGTCAACATGTTCATCTACGAATTGGGATTTTTAAGGGTTTTTAAATGGTGTTAAAAGAAATGGAAGAGCAAtagtttttttgtgggggggtggAGTTGTCTTTGTCCTTTATTGGCATGCTGTGCAGTTATGGAAGGTTGGCTTCACCAACACTCAACTTTGTGAATGTTATGCTTTGATATGACCAATATATCTGCTTGTTTGTCGATTTTGCCATAATAACGACCTGTCATTGAACATACATTGACAACCCCGACCAACATCGACAGCACTCTGGAGTTAACTGGCTGAATTGGACTTCATGACTCTTTGCAGAATCAAATGAGAAGTATTTTTTTTCTTTGTCCATTTTTTTCAATAGTTGGATTTCCATTGTTTTTACTCTTATGGAGGACTGGTGGTCATGACCTCAAAATATAGGACTTAAAATGTTTCTCTGCATGTAGTTGCGCCTAGCATTGTCTTGGTTATGTCTGGTCTTGGTGCAGAAACGGTCTATAAATGTGAGTAAAGAGGATCTTGTATAAAACCTGAGGGGTTTTGCACTTTCAGTGAAAGTCATTGTGTACAGCCTCTTGATTAGCTGTGGCACCCAAATAAAAGAAAATCACACTTAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18423 CSE1, CAS, XPO2; exportin-2 (importin alpha re-exporter)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1681996 lncRNA upstream 17980 60060570 ~ 60060770 (+) True G1470595
TU1681987 lncRNA upstream 28516 60049848 ~ 60050234 (+) True G1470586
TU1681986 lncRNA upstream 29283 60049213 ~ 60049467 (+) True G1470585
TU1681975 lncRNA upstream 39568 60038891 ~ 60039182 (+) True G1470575
TU1681956 lncRNA upstream 65228 60013235 ~ 60013522 (+) True G1470557
TU1682010 lncRNA downstream 6848 60102218 ~ 60103241 (+) False G1470607
TU1682015 lncRNA downstream 6848 60102218 ~ 60103947 (+) False G1470607
TU1682018 lncRNA downstream 6848 60102218 ~ 60104007 (+) False G1470607
TU1682019 lncRNA downstream 6848 60102218 ~ 60103413 (+) False G1470607
TU1682014 lncRNA downstream 7627 60102997 ~ 60103241 (+) True G1470607
XM_036950349.1 mRNA upstream 313 60063250 ~ 60078437 (+) False LOC110494255
XM_036950350.1 mRNA upstream 313 60063250 ~ 60078437 (+) True LOC110494255
XM_021569177.2 mRNA upstream 191708 59857225 ~ 59887042 (+) False LOC110494251
XM_021569178.2 mRNA upstream 191708 59857225 ~ 59887042 (+) False LOC110494251
XM_021569179.2 mRNA upstream 217734 59857228 ~ 59861016 (+) True LOC110494251
XM_021569193.2 mRNA downstream 149415 60244785 ~ 60247910 (+) False LOC110494259
XM_021569192.2 mRNA downstream 149547 60244917 ~ 60247910 (+) False LOC110494259
XM_036950353.1 mRNA downstream 170109 60265479 ~ 60383411 (+) False srgap3
XM_036950354.1 mRNA downstream 170109 60265479 ~ 60383411 (+) False srgap3
XM_021569197.2 mRNA downstream 170110 60265480 ~ 60383411 (+) False srgap3
TU1680364 other upstream 1570865 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2464450 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2530572 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2595161 57478797 ~ 57483589 (+) True G1467159
TU1677994 other upstream 2928407 57149303 ~ 57150343 (+) True G1467031
TU1682011 other downstream 6522 60101892 ~ 60104007 (+) False G1470607
TU1683229 other downstream 877108 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1460949 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2603133 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2614969 62710339 ~ 62711136 (+) True G1473177

Expression Profile