RNA id: XM_036948424.1


Basic Information

Item Value
RNA id XM_036948424.1
length 3896
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110494257
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60104033 ~ 60110249 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTGTCAAGGTCCTGGCCATCATCTCCATCCTCTTTATCGTGCTGTCAACCATTGCCTTGTCTCTGAACACCCTCCCAGAGCTGCAGGACATAGACGAGTTTGGCCAGGTGACAGACAACCCTCAGCTAGCTCACGTGGAAGCGGTGTGCATCGCCTGGTTCACCATGGAGTACCTGCTCCGCTTCATCTCCTCGCCCAGCAAGTGGAAGTTCTTCAAAGGTCCACTAAACATAATAGACCTGCTGGCCATCCTACCCTACTACGTCACCATCTTCCTGACTGAATCCAATAAGAGCGTTTTACAGTTCCAGAACGTCCGGAGGGTGGTGCAGATCTTCAGGATCATGCGTATCCTCCGTATTCTGAAGCTGGCCAGGCATTCCACAGGGCTTCAGTCTCTGGGCTTCACCCTGAGGAGGAGCTACAATGAGCTGGGCCTGCTCATCCTATTCCTGGCCATGGGCATTATGATCTTCTCCAGCCTTGTCTTCTTCGCCGAGAAGGACGAGGAGGACACCAAGTTCAAAAGCATCCCGGCCTCCTTCTGGTGGGCTACCATTACTATGACTACGGTGGGGTATGGGGACATCTACCCAAAGACTTTACTGGGTAAGATTATTGGGGGTCTATGCTGCATAGCTGGAGTGTTGGTGATAGCCTTGCCCATCCCCATCATCGTCAACAACTTCTCAGAGTTCTACAAGGAGCAGAAGAGGCAGGAGAAGGCCATCAAACGGCGGGAGGCCCTGGAGAGGGCCAAGAGGAATGGCAGCATCATCTCCATGAACATGAAGGAGGCGTTTGCACGCAGTGTCGAGCTCATAGACGTAGTGGTAGAAAATAATGGAGAGAACATGGAGAAGGTGCAGGACAACCACCTGTCTCTTAGCCACAGGAAAGAGACTCCCAAGAGGACCACCTCAGAGATGGGCTTCACTCAGTCATTAGAGCCCAGCTCACCAGACAAAGCCCATCCCGCCAGCCCTCAGCAACTCAACGCTCAGAAACTGGAGGAGATGTACAACAAGATGGCTAAGACCCAGTCTCAGCCTAACCTGAACAGTAAGGACAAGGGGCATTTGTCTAAAGCGCCCAAGAAGAGAGACGAGATAGAGATGGGTATCATTCCCACAGAGCCTGCCCCAACCACAGACATGAGGAGCATGTCCAGTATTGACAGCTTCATGAGTTGTGCTGCTGACTTCAACGAAAGTGCTCGCTTCTCCCACAGCCCCAGCACCATTGTTCCAGGGAGGGTTAGCACCAACCCCGTGCTCGAGACCACCCTGGAGCACGAGGCCATTGTGTCCCCCCACAGCGCCACCAAGGTCCCTGGAGGACGAGGCTCCAAGCACGGCCTGTTCTCTGGCAGCCCCCGGGGCCTACGCTTCAGCAACCCGCTAAAGAACCGCTCCCTCAAGGTCAACTTCAAAGGCGGGGACGCagacccttcctcctcctccttaccaCAGGGGCCAGGGGGCGGGGCCCTCTCAGATAGCTCTGCCCTCTCTGCCCACTCCCTCATGAGTCCTGAGGTGTCTGTCTACACCACTGCCAGCAGCAAGACTCCACCCCCTGAGACCCTGATCCCGACAGTCTTCACATTCCATGACGCATCCATCAGTAAGTTCATTGATGCTGACACGGACGAGGAGGAACACCTCCATGATAGCTCGGGTACAAACGCCTCCCAGAGGCTTCTGGGAAAAGCCAGCCCCAAGCTCAGCTCCTACAGCAGCCACCACTGCGTGGCCAACCACCTGGAGGGCTCCCAGAGAATGCTGGGTAACAGTGTGTTCCCCTTTGAGGCCCAGTCAGGTGGGGGACAGGGGAATCATGTGCTCTCCCGGGGAGAGAGGAGTCGTTCAAACACCCATAATGAGAGCAAGTGAGGTAGGGGAGGGAATAGATAGTACAGACAGGACCCAAACAGGAGGACATTGTGTATAACTCTGCAGATCTGGTCACACACTGTAGATTTAGGCATTACTGAATCAGCATTGTGCTAAAAGAAATGTTGTTGATTTCCTTGTGTTTTCTTCCTCAAAACTGGCCTTAGTTATATGTGACTATGTGTATGCATAGCGTGCGCGTTTGTTTGTATGTCTGTAGGTGTATGTGTATGCAGGATGATAGgcagatacacatacacacacagttatgCAGTATTTTATGTATATTGTTTTCCTTTTTTTATAATATAAATAGTATATTTTCTTTGGTCTGTTATTTTATGACTCTATCTGAGAGGTGAACTTTCATCCTTGTTTATCAACACgcctctgcctcccacctcccacCTCCCGGGTAGCACTAACCTCATTGACCGAATATTTTCAATTCTGTACAGggtattctttgttgttttgtttgtttacttatttttttgtttttgattgtgtgtgttttatccagacaggttagggttaggtttaacccGCTCTCCTTTATATTTTAATAGTCTCTCAGATGTGTGGTTGTAGTTGATTGTCATACTTCGTATCCAATCACCATTGATACTGGGGAGGGGATAATAGCATCCATTTAGGCTGGATTGAAAGTACTGAAAACACTCAGATTTTCCATTTTAAAGTTCCACATTTGTACAATtgataatactgtaatactgtaatgtgCAACAAGAACATGAAAAAAGAACACACTCATTGtgcaaaaagttatatttttaaaatatatttttagaatgGTATATTAGAAGAATGAATTATGCTAAACTCATAGATTTGCATTGCAATACATTGTTTTATTTTAGAGAGAATATTACAAGATAATGAATTTGTATTTTTTGCTAGTAGTTAGGGTAAATGTTTGTCCTTCTATCCTTCGTACAATGTGAATAGCTTTGTATAACACTCTGTTAAATCCAGGGCATCTTTAATCATATCATGGACCCACAAAATGTTATTAATTAATTATAACAATAGTTTCAAAACAGCAGAATGTCCGAAATATTTCATGAAGCCAGGACAAACTCAAACACAGCAGAGatgaagggagaagggaggagtggAAATACGGAAGGGGGAGATGTTAAGATGGCACACAGGAAGTGAGGACAGGAAGAAAGAATAGGGAAGAGCACTTTATTTTACAGAGGGAATCATGATCTCATTGGATGACTTCCACACTATGGATGGTAGAGCGGTTGACCAGCTGCCAGAATTCACAACAAGCATCATATGGCTACATACACAGACACTGACAAACACAGAGCCACTCACATGCTCATACACATGCAGTCAACACATGCTCACAGGCATGTTTTATGTGGGTTCAATCTAAACTTAACCTATCCCAGTACATCTCATAGGTAGTATCTGATACAGACCACATTTCCAGCACAATATATCCACTACCCTCATACACTTTACAATGTTAAAGATATGATTTTAATTTAGCCTTTAAAACACCCGACTAAACACTCAATATAGAGTGAGAAAAAAGTGTATTGTTGACTTCCATTGTCCTATTTTTCTATTGTCAGACTACATGCAAAGAGATAGGTATTTCTGTGCCTCTGCCAGTAACAAACTTGCTTCCCTCCCCCATCTCCACTCTGAAAAGTCTGTCACTATAGCCTCAGTTTAATAGAGCTCACATGACAATTCAATAAAGTGTAAAGCAAATAAACACAGAGAACTGGGTCACCATGCTGTCAGGGTGTGGTATTAAAGCACACAAACACCCAGGCACGCAataaacacagcacacacacacacacacacacacacacacactggtagcacacagagacacacaccccaTAGActtaaataaatacacacatattTTAGAATAACCAAAGCCAAACACAATCACACATGAGGGCATGGCCTACTAAAGAAATATACTATCAAAAAATCAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1682484 lncRNA downstream 5848 60097845 ~ 60098185 (-) True G1471029
TU1682469 lncRNA downstream 46010 60057813 ~ 60058023 (-) True G1471016
TU1682462 lncRNA downstream 53484 60050310 ~ 60050549 (-) True G1471009
TU1682451 lncRNA downstream 73708 60030126 ~ 60030325 (-) True G1470998
TU1682378 lncRNA downstream 99456 60002642 ~ 60004577 (-) True G1470932
TU1682493 lncRNA upstream 3962 60114211 ~ 60114423 (-) True G1471038
TU1682494 lncRNA upstream 6066 60116315 ~ 60116540 (-) True G1471039
TU1682498 lncRNA upstream 14105 60124354 ~ 60124614 (-) True G1471043
TU1682499 lncRNA upstream 14722 60124971 ~ 60125240 (-) True G1471044
TU1682505 lncRNA upstream 22040 60132289 ~ 60132504 (-) True G1471050
XM_021569187.2 mRNA downstream 75382 60008004 ~ 60028651 (-) True LOC110494254
XM_021569186.2 mRNA downstream 75383 60008004 ~ 60028650 (-) False LOC110494254
XM_021569180.2 mRNA downstream 104293 59991520 ~ 59999740 (-) False LOC110494253
XM_021569181.2 mRNA downstream 104293 59991520 ~ 59999740 (-) False LOC110494253
XM_021569185.2 mRNA downstream 104293 59993268 ~ 59999740 (-) False LOC110494253
XM_036948425.1 mRNA upstream 81476 60191725 ~ 60193447 (-) True LOC118940153
XM_021569191.2 mRNA upstream 87371 60197620 ~ 60223564 (-) True LOC110494258
XM_036950351.1 mRNA upstream 125626 60235875 ~ 60244681 (-) False thumpd3
XM_021569194.2 mRNA upstream 125626 60235875 ~ 60244818 (-) True thumpd3
XR_005037150.1 mRNA upstream 146599 60256848 ~ 60257008 (-) True LOC118940555
TU1682385 other downstream 107707 59990975 ~ 59996326 (-) False LOC110494253
TU1682386 other downstream 107707 59990975 ~ 59996326 (-) True LOC110494253
TU1682225 other downstream 427339 59674541 ~ 59676694 (-) True G1470802
TU1678904 other downstream 2871326 57229507 ~ 57232707 (-) False hig1a
TU1682687 other upstream 265497 60375746 ~ 60376592 (-) False G1471219
TU1683060 other upstream 527931 60638180 ~ 60639335 (-) False G1471564
TU1685283 other upstream 2136130 62246379 ~ 62250638 (-) False ccdc174
TU1685284 other upstream 2136130 62246379 ~ 62250638 (-) False ccdc174
TU1685286 other upstream 2136130 62246379 ~ 62250638 (-) False ccdc174

Expression Profile