RNA id: XM_021569191.2


Basic Information

Item Value
RNA id XM_021569191.2
length 2953
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110494258
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60197620 ~ 60223564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAACGCTACAGAGCttgatttggcctctgcatgcctccaGAAACTCTGCAATTGCGTCACCCCCTCCGTCCACAAtttcggatcaagcataaatgGGCTTTTAAGGCGTCCTACGTGAGCTCTTGCGGATAGGAAGATGGATGAGGAAACATGCAGGGTGAGGTCGGGGAACACCCTGGAACGCCGTCATCGGATGACATAAAACGGCACTATTTCAGGTGGACCCTGTCGTCTTAAATTATTCATATGTTTTCACTGCGGCGCACCAACGTGCAGGTTGTGTTGGTAAAAGTACTGTACAGCCGAGCAAGTGGCACATCGTCAAGACTACGAGCTATGATTTGGACGATACTTTTGATTGTCCAGGGCATCCTTATCTTATTCATACTTGTTTCGAAACGCTCTAGGTCAGAGAAAGAGCCACCTTTAGACAAAGGAGTTATTCCGTGGTTAGGCCATGCCCTTGAGTTTGGAAGAGATGCTTCCAAGTTCCTAACCCGTAtgaaggtgaagcatggtgatatCTTCACGgtgcgtgTGGCTGGACGTTATGTGACAGTGCTGCTGGACCCCAGCTCATATGATGCTGTGATAGAGGACTCTGTGTCTCTGGACTTCACACGCTATGCACAGGTTCTCATGGACAGGATCTTTAGCCTGCGGCTCCCCCATCACAACCCTGCTGTAGAGAAGGCCATGATGAAACAGCACTTTGAGGGGGAGAGCCTGTCCTGCCTGAGCAGCACTATGCACTGCCAtctccagtccctgctgctgcaAGCCTGTCACAACCAGACTGACTGGAACACGGACGGGCTCTTCAGCTTCTGTTACAGTCTTCTCTTCAGggcAGGGTACCTCACACATTTCGAAGGGGAGCAGAAAAGTAACAGAACAGACCCCATTGCCGTTTACGCGGAGTACCGGAAGTTTGACAACCTCCTGACCAAAATGGCCAGGACCATGCTAAAACCAGaggagaagAGGACTGCCCACAGTGTACGGGTGCGTCTGTGGGATCTGTTGGCCCCGGCGGGGCTGGGTAAGGGCTCGGGGTCCAGCACCTGGCTGAGATGCTACAGGCACCTTCTGCAGGAGGAGGGAGCTGACgaggagacacagaggagagcccTGCTGCTGCAGCTCTGGGCCACACAGGGTAACGTTGGACCTGCTGCATTCTGGCTCTTGGGTTTCCTGTTGACCAATCCTGAGGCCATGAGGGCGGTGAAGAAGGAGTTCAGCAAGATCTCAGGGCAGGACTCAGCACAGTGTCCCCTACTGGACAGGCTACAGCACACACCTGTGTTTGACAGTGCCTTAGAAGAGACGCTgaggctcagtgctgcccccttcATTACCAGAGAGGTAGTGCAGGCAAAGACCCTGCACATGGCCGATGGGCAGGAGTACAAACTCAGGAGTGGGGACAGAGTGTGTCTGTTCCCATTCATAAGCCCTCAGATGGACCCTGAGATCCACCAGGAACCACAAAGATTCAAGTATGACCGCTTCCTCAACCAGGAAGGTTCTGTGAAGAAGGACTTCTTTAAAGGAGGGAGACGGCTCAAGTACTACACCATGCCATGGGGCGCGGGCACCAATGGCTGTGTGGGCAAACGCTTTGCTATCAGCTCAATCAGACAgtTTGTGTACCTGGTGCTGTCTCATCTAGAACTGGAGCTGTGCGATCCAGAGGCTCAGATGCCAGAGGTGAACTCCAGTCGCTATGGGTTTGGAATGTTGCAGCCCGAAGGAGACCTGGCCATCAGATATAAACCTAGACGGTCACATTGAAGACAGAGACGGGTGCGGAGATCTCTCAAACCAGACATCGATGTATGCTCATTTCAAGGTGTTTGACATATGTCAATATAAAGCCTTGTATGTATTTTTATACCAACACAAATGTACAGTGTAATGTTATTGTGCTATTTATCTTGAATTATAATTTGTATATTTCACTTTAAAGTTTTTGTTTTTGTTCTTCACTATTTTGTTTATACAATATGCTGTATCAATGATTAGCTTGGCTTAATAATACCAGCCCCATGTGTTTAAAGTGCTTTCCATATAAGCCCCACCTAattacaattatatatatatttttttaatgttcaCAACAAATTTGGAGCTTATCCCAGTGATTAATTGGTGTCATAAATCCCCTCCAGTCTCATGACAGTTGTGTCCATTGCATCAGAGAACTATTTGGTAGATGCTTTGAGAGTAATGGGGTGGCTGGCCACTCTTTAAACAGAGCTAACCACACATTCGTCACACTGACATTGCCCTGCTGGATGGAGGCAGAGTGAATGGAAAGTTTAGAATTATATGTCATTTGAAAATAATTGATAGCCCAGTTGACCAATAAGAGTTGGCCTACTTTTTCGTCACTCTTTACATTACTGAGTCCATATCCCCCTAACAGGTTTCTGGGGATCCCAGCAGCATAACATTGAGTGGTAAGCTTATGCATGTACAAAGAGGTTGCAATTGTAAAGCATGATGTATGTAAACCCTGGCTTGCTGAAGCAATGTATTGCCCATTGAGAGgctttggaaaccactggtcggccatattggcactcccaagtaggagcagtcctccgtaggaattaatggaattctacagtattttaatTAAAAGGACAAAAtcacatgtatttaagtatttgtttgttgtagtggggacagtaacatttgTACTCTCTAAAGAAAATACATTAAGGAAaatgtttatacattttttttctttttttaaatgtttagttCACGTAATATAATTTCAAAGAATGCATTAAGGcctctgtaatataataaagggGTCAAAAACGCATGTAGACATTAATACATGCATTTCTATTGCTTCCAAAATCTTTTTGTTACAATTGAGGAGGAGTACCAAGATAACTGTGTGGTTTCTTCAATAAAGagccccctgtcagtca

Function

GO: NA

KEGG:

id description
K01831 PTGIS, CYP8A; prostacyclin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1682550 lncRNA downstream 7644 60189692 ~ 60189976 (-) True G1471095
TU1682548 lncRNA downstream 10430 60186989 ~ 60187190 (-) True G1471093
TU1682534 lncRNA downstream 26357 60171002 ~ 60171263 (-) True G1471079
TU1682533 lncRNA downstream 28371 60168940 ~ 60169249 (-) True G1471078
TU1682530 lncRNA downstream 30967 60166413 ~ 60166653 (-) True G1471075
TU1682575 lncRNA upstream 4179 60227743 ~ 60228037 (-) True G1471119
TU1682576 lncRNA upstream 5310 60228874 ~ 60229194 (-) True G1471120
TU1682580 lncRNA upstream 9071 60232635 ~ 60232857 (-) True G1471124
TU1682538 lncRNA upstream 21925 60245489 ~ 60247884 (-) True G1471083
TU1682669 lncRNA upstream 126918 60350482 ~ 60351321 (-) True G1471206
XM_036948425.1 mRNA downstream 4173 60191725 ~ 60193447 (-) True LOC118940153
XM_036948424.1 mRNA downstream 87371 60104033 ~ 60110249 (-) False LOC110494257
XM_021569187.2 mRNA downstream 168969 60008004 ~ 60028651 (-) True LOC110494254
XM_021569186.2 mRNA downstream 168970 60008004 ~ 60028650 (-) False LOC110494254
XM_021569181.2 mRNA downstream 197880 59991520 ~ 59999740 (-) False LOC110494253
XM_036950351.1 mRNA upstream 12311 60235875 ~ 60244681 (-) False thumpd3
XM_021569194.2 mRNA upstream 12311 60235875 ~ 60244818 (-) True thumpd3
XR_005037150.1 mRNA upstream 33284 60256848 ~ 60257008 (-) True LOC118940555
XM_021569204.2 mRNA upstream 376524 60600088 ~ 60602922 (-) True LOC110494265
XM_021569206.2 mRNA upstream 392684 60616248 ~ 60618713 (-) True LOC110494266
TU1682489 other downstream 90433 60106669 ~ 60107187 (-) True LOC110494257
TU1682385 other downstream 201294 59990975 ~ 59996326 (-) False LOC110494253
TU1682386 other downstream 201294 59990975 ~ 59996326 (-) True LOC110494253
TU1682225 other downstream 520926 59674541 ~ 59676694 (-) True G1470802
TU1678906 other downstream 2964913 57229507 ~ 57232707 (-) True hig1a
TU1682687 other upstream 152182 60375746 ~ 60376592 (-) False G1471219
TU1683060 other upstream 414616 60638180 ~ 60639335 (-) False G1471564
TU1685283 other upstream 2022815 62246379 ~ 62250638 (-) False ccdc174
TU1685284 other upstream 2022815 62246379 ~ 62250638 (-) False ccdc174
TU1685286 other upstream 2022815 62246379 ~ 62250638 (-) False ccdc174

Expression Profile