RNA id: XM_021569192.2


Basic Information

Item Value
RNA id XM_021569192.2
length 2759
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110494259
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60244785 ~ 60247910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattattatattatcatgGATAAAGTTGCTTAGCGAACATTATATAGCTGTATTTACTAGCTTGTATAGCAGCTGGTGGCAAAAAGGTACATTTCCGGTAAATTTCCATGAAAATTTTCAACGGACTGTTTGTAATGTTGGGAATTTTAGAAGCACTTCTATATTTTTTATGTGGAGAAACACGGTACTCTTTTTGAAAGGAGCCATTCTTTATACTTCAGCAATACATATATTATATTTGCTACATCAGGGCAGGATCCCATTGTTAACGATATCCTCCCTAGTGAGTAAGGGGGAAGAATGCCACGTTTAGTATCAGATGTGTGGAAGCATTTCACCCCAGCCATTAATGACGATGGGAAGACTATGTACATGTGCAACTACTGTACAAAGCAGTATGTAAAGAATGCCACAAAGTTGCAGGTGCATTTAACCAAATGCAAAAATGCAACATTATATCAAAGTGCACAAGAACCATTGTTCTGCCATACAATGGAAGACCACAGCCAGAAGAATGCCGATGAGTGCCTGGCTCGAGCAGTATATGCCACCGGCTCACCCCTCATGCTCAGTGAGAATGTGTACTGGAAGAGATGTTTCAATGTTATTTGCCCTGGATACTCTCCTCCAAACAGAGATGCTCTGTCTACTAATTTACTGGAAGCTGAGTTCAACAGAGTGCAAGGAAAGGTGAAGGAAACAATAGAGAAGGCAGACAGTGTTGCTGTTGTCTCCGAAGGGTGGTCAAATGTACAAGGGGATGGCATCATAAACTACATAGTCTCTACTCCTCTACCATTGGTTTTCAAGACGACAGACAaaaaggacaacacacacacgagcacgcaCATTGCTGATGAGCTGAAGGCTGTAATCAATGACGTTGGACCACAGAAGGTGTTTGCTGTTGTTACTGATAGTGCTGCAAACATGAAGGCTGCCTGGGCACAAGTGGAGGAGGCCTACCCTCACATTACACCTATTGGGTGCATGGTTCATGGGCTTAACCTACTCATCAAGGACATCATGAGTTTGCAAACAATGGAAACACTATACAAGACAGCCAAGCAAGTTGTACAGGATGTCAGGAGCAAAGAGGAAGTGTCAGCAACCTACAGCAataaaaatacaaagaaaaataacTCCACACTGAAACTGACCTGCAACATTAGATGGGCTGGGGTTGTCACCATGTACAGCAGCCTTCTGAAAGACAAGGAGTCTCTGCAAGAAATGGCAAGATCACAGTCTGTGGAAATTGAAATCTCCATCAGGAAAATACTGCTTGATGATgtgttttgggagagagtggttcGCAATCTTATGCTACTCTCACCGATCGCATTTGCCATTGATCAGATTGAAGGAGAGGATGCTGTCTTGTCAGATGTTCTCAGGCTTTTTGCTGATTTAAAAGACAAAATCAGCACAGCCCTCCCTTCAGCCTTGCTACTCAACACAGAGGAGACGGCAGTTGTTCGATTTCTGGAGCTGTGTGGAGAGTTTTGTATCAAGCCAATTCACGCTGCAGCATACATGCTGGATCCAAAGCATATTGGGAAACAAATACTTTCTGGAGAACAGATCAACAGCGCATACTATGTGATTTCTACCCTCTCACACCACCTCAATCTTGATGAGGGCAAAGTTCTGGCAAGTCTGGCAAAGTTTTCTACCAAGCAAGGCCTTTGGAATGGGGATGGGATATGGCAATCATGCCAGCACATTTCTCCCTACACCTGGTGGAAGGGTCTCTGTGCATCTGAGGCCCTGTCACCCATCGCCTCTGTGATCCTTCagatcccaccaacatcagcagCTTCTTTGCGCCTCAGAGCATTCTTTGGGAAAACCAAAACAAAGGTGGGCAACAGTTTAACAAACAACAGAGTGGAGAAATTGGTGGCTATTAGGGCGAACCTTAACCTTTTTGAGCCAGGAACAGAACTAGGGTCCAGCACACAGCTTCAGAGTGACACAAAGGAGGACATGGACATTAAATCAGAGTCTGAGTGAACAACTAAGGATGAAAAAAGGACAAAATATGAACAACGAGCTTAATAAGTGGACAGGTCATTTATTTTTACAATGTACAATGTTAGGCTACTGTTGGATTCTAGCTTGAAGTATACTTATTCATGTTACCATACCAGAACCATACCAGAACTTATTGATTACTTTACATGTATAAGGAATGTGTCAATGAAGGGTACAGAGGAACTCTGTGTGTGGAAAGTTACTGAGTGATATGGAAAGTTAccgagagggaaaaggggaagtgCAAAAAGTTGATATTCTGTTCAAATATGTTATCGTGGAATATTAATGTTCCtaaggagggaggcagagggcaACAGTAGTCTAGTTTTAGTacctgataaggcaggccagttTCTGCGGAACCAGGACCACGAGGGATGTGGAACTCAACTCGAGATAAGGTCAACAGTTGAAGACAAAATACACTGCTGGGAGGTGGGCCACAGAGGCCCACCATGAAGGCCATCTGAACACAGTCCTATCTCACGCACACATATTTCCAAGCCCATGAGGGTCCTAGACTTAGGCAGGGCCATGACAATACCAGTAAGAGGAATCTACTATGTTTCTGCCTAACAACAGACACTACTTTCCTATCTTAGACATGCAAGGAGATGACTCTGCCTAGTTGGAAGGTATAAAGATGTGCTTGTGTGACTTGTATGTTGTCTTTGCAGCTGTATGAaccagtgggtgaataaacttggtttgagctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1682081 lncRNA upstream 51698 60192910 ~ 60193219 (+) True G1470666
TU1682080 lncRNA upstream 52017 60192641 ~ 60192900 (+) True G1470665
TU1682079 lncRNA upstream 52509 60192175 ~ 60192408 (+) True G1470664
TU1682070 lncRNA upstream 67160 60177556 ~ 60177757 (+) True G1470655
TU1682067 lncRNA upstream 71765 60172943 ~ 60173152 (+) True G1470652
TU1682119 lncRNA downstream 2942 60250852 ~ 60251056 (+) True G1470701
TU1682107 lncRNA downstream 12592 60260502 ~ 60261000 (+) True G1470689
TU1682131 lncRNA downstream 16810 60264720 ~ 60264923 (+) True G1470713
TU1682193 lncRNA downstream 119241 60367151 ~ 60367406 (+) True G1470773
TU1682132 lncRNA downstream 131906 60379816 ~ 60383800 (+) True srgap3
XM_021569189.2 mRNA upstream 149547 60078750 ~ 60095370 (+) True LOC110494256
XM_036950349.1 mRNA upstream 166480 60063250 ~ 60078437 (+) False LOC110494255
XM_036950350.1 mRNA upstream 166480 60063250 ~ 60078437 (+) True LOC110494255
XM_021569178.2 mRNA upstream 357875 59857225 ~ 59887042 (+) False LOC110494251
XM_036950353.1 mRNA downstream 17569 60265479 ~ 60383411 (+) False srgap3
XM_036950354.1 mRNA downstream 17569 60265479 ~ 60383411 (+) False srgap3
XM_021569197.2 mRNA downstream 17570 60265480 ~ 60383411 (+) False srgap3
XM_021569200.2 mRNA downstream 186016 60433926 ~ 60508595 (+) False rad18
XM_021569201.2 mRNA downstream 186047 60433957 ~ 60500984 (+) False rad18
TU1682011 other upstream 140910 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 1737032 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2630617 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2696739 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2761328 57478797 ~ 57483589 (+) True G1467159
TU1683229 other downstream 724568 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1308409 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2450593 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2462429 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 2969038 63216948 ~ 63217594 (+) True G1474159

Expression Profile