RNA id: XM_036950353.1


Basic Information

Item Value
RNA id XM_036950353.1
length 7671
RNA type mRNA
GC content 0.47
exon number 23
gene id srgap3
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60265479 ~ 60383800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAATTCATCTGTCCCTGAGGCGCAAATTCTCAGTGCGCACAGCTAATCAAAGACTGGTCCACTGCGAACGCACAAATATTCATTTTTGGGCACTCTAGAAATAAAGATATCATCGAAATGGGTGAACGCCTAGCCTACATCCACGATCATTCTATTTCCATTATTTTCTTGCTTTGAGTAGAAGGGTTTTGTTTTTCTCCGCTGCAGCTTTTGCATTGGATGGCATGCTTTATCAAGAAAAGCGTAGTACTTCTCTTCAATATAAAATAGACATAGCCCTCTGCAGCTATTCGGACACAAAGAGCAGAGGACGGAGAACAACGCTGCTGGAGTCGAGAATCATCACAGAGGACCTCTTGCGCAAGCCCCCACGAAAAATGTCATCTCAAACCAGAGTCAAGAAGGACAAGGAGATCATAGGAGAATATGAAACGCAAGTCAAAGAGATCCGTAACCAGCTGGTGGAGCAGTTCAAATGCCTGGAGCAGCAGTCCGAGTCTCGTATCCAGCTGCTACAGGACCTGCAGGACTTCTTCCGCCGCAAGGCTGAGATCCAGCTGGAGTACTCCCGCAGCCTGGAGAAACTGGCCGAGCGCTTCTCCAACAAGATCCGCAGCTCCAGAGAGCACCACCAGTTCAAGAAAGACCAGCACCTGCTGTCCAGTGTGAACTGCTGGTACCTGGTACTGAACCAGACCAGGAGGGAAAGCAGGGACCACGCCACCCTCAACGACATCTACACCAACAATGTCATCGTCCGCCTCGCCCAAATCAGCGAGGACGTCATCCGCCTCTTCAagaagAGCAAGGACATTGGGATTCAGATGCACGAGGAGCTGGTAAAAGTGACCAACGAACTCTACACTGTGATGAAGACCTACCACATGTACCACACGGAGAGTATCAGTGCTGAGAGCAAGCTGAAGGATGCTGAGAAGCAGGAGGAGAAGCAGTTCAGTAAGTCTGGAGACCTCAATGTCAACCTGCTGCGCCACGAGGACCGGCCCCAGAGACGCAGCTCCGTCAGGAAGATCGAGAAGATGAAAGAGAAGagACAAGCCAAGTACTCAGAGAACAAGCTGAAGTGCACTAAAGCCCGCAATGACTATTTGTTGAACCTGGCAGCGACGAATGCCGTTGTGGCGAAATACTACATTCACGATGTCTCTGATATGATTGATTGCTGTGACCTGGGCTACCACGCCAGCCTTGCGCGTACCTTCAGGACCTACCTGTCAGCTGAGTACAACCTGGAGACAAGTCGCCACGAGGGCCTGGACATCATGGAGAACGCCGTGGACAACCTGGACTCCCGCAGCGACAAGCACAAGATCATGGACATGCACAACCAGGTGTTCTGCCCTCCCATGTGCTTCGAGTACCTGCCCCACATGGGGGACGAGGTGTGCCAGGTGAGTGCCCAGCAGCCTGTGCAGACTGAGCTCCTGATGCGCTACCACCAGCTGCAGTCCCGTCTGGCCACGCTCAAGATCGAGAACGAAGAGGTGAGGAAGACTCTGGACGCCACCATGCAGATGCTCCAGGACATGCTGACTGTGGAGGACTTTGATGTGTCTGATGCCTTCCAGCATAGCCGCTCCACTGAGTCCATCAAATCGGTGGCTTCCGAGACCTACATGAGCAAACTGAACGTGGCCAAGAGACGGGCCAACCAGCAGGAGACAGAGGTCTTTTACTTCACTAAGTTCAAGGAGTTCCTGAACGGCAGCAATCTCATCATTAAACTGCAGGCCAAGCATGACCTCCTGAAGCAGACATTGGGAGAAGGAGAAAGGGCTGAATGTGGGACTACGAGGCCCCCCACTCTCCCCCCTAAACCACAGAAAATGCGGAAGCCTAGGCCGCGCTCAGTCTATAACCATAAGCTGTTTAACGGCAATATGGAGACATTCATcaagGACTCCGGTCAACCTATTCCACTTGTGGTGGAGAGCTGTATTCGACACATCAATTTGTACGGGCTCCAGCAGCAGGGCATATTCCGCGTGCCTGGATCCCAGGTGGAGGTCAATGATATTAAAAACTCATTTGAGAGAGGTGAAGACCCATTGATTGATGACCAGAATGAACATGACATCAACTCAGTGGCAGGGGTCCTCAAGCTGTACTTCAGGGGTCTGGAAAACCCTCTGTTCCCCAAGGAACGCTTCCTGGACCTCATGTCTACTATCAAGCTGGAGTCTGGAGCTGAGAGAGCGCATCACGTCCAGCAGATTATTGTGACTCTTCCTCGCGCCGTCATCATCGTCATGAGATACCTGTTCGCTTTCCTCAATCATCTGTCCCAGTACAGTGATGAGAACATGATGGATCCCTATAACCTGGCCATCTGCTTTGGCCCCACCCTGATGCCCATCCCCGACGGACAGGACCCTGTAGCCATCCAGGCACACGTCAATGAGGTCATAAAGACCATCATCATCCACAACGAGGTCATCTTCCCCAGCCACCGCGAGCTGGACGGGCCGGTCTATGAGAAGTGcatgactggaggagaggagtactGtgACAGCCCCCACAGTGAGCCAGGCACCATCGATGAGGCTGACAATGGGACTGAGCCACACACCAGTGAAGACGAGGTGGAGCAGATTGAGGCCATAGCTAAGTTTGACTATGTGGGGCGCACCCCCCGGGAGCTGTCCTTTAAGAAGGGGGCGTCGCTGCTGCTGTACCACCGCGCCTCTGAGGACTGGTGGGAGGGCCGGCACAATGGCGTGGACGGACTGATCCCACATCAGTACATAGTGGTGCAGGACCTGGATGATGCGTTCTCGGATAATCTCAGTCAGAAGGCGGACAGCGAGGCGAGCAGTGGACCACTGCTGGATGACAAGGCCTCATTCAAAAACGACGTCCCATCACCGTGTGAACACTCCCCCGACTCCAACTTTGGAGGAGTCATGGGGAGggtGCGGCTACCTTCTGACGGGGCCGCCACCCCTCGACGCCACAGTGGAGAGACCCACAGCCCTCCTCGGGGCACTGACACACCCCCGCGGGCCGCAGCCTGTCCCAGCAGCCCCCACAAGGTGGCAGTTAGCAGGAGCCGCATGGAAAGCCCAGAGAAGAGGCGCCTAGGAACATTTGGCAGCGCGGGCAGCATCAACTACGCTGACAGGAAAGCCTATCCTGAGGGCCACCCCCTGAGGCCTGTAGCAGGGGCCACACGCCACAGTAGCCTGGGGGACCACAAGTCACTGGGGGCTGAGACACTGGCAGAGGACATAAAGAAGACCATGACCACGGCCCTACATGAGCTGCGTGAACTGGAGCGCCAGAACACGGCCAAACAGGCTCCAGACGTGGTGCTGGACACCCTGGACACCACCATGAAGAACCCTGTGAACTCAGAGCCTGGCAGCCCCCTCCACACCATCATGATCCGCGACCCAGACGCCGCCATGCGCCGCAGCAGCAGTTCCACCTCTGAGATGATGAGCACCTTTAAGCCCACCCTGTCAGCCCGTCTGGCCGGAGCCCAGCTGCGCCCCCCGCCCATGAGGCCCGTCCGCCCGCCCCCCACCGGGCACCGCTCCTCCAGCTCCAGTTCCTCTGGGGTGGGAAGCCCTGCTGTCACGCCCACCGAGAAGATCTTCCCCAACAGCACTGCCACGGCTAGCTCTCCAGCCAATGCAGCTAATGCAGCCGGGGACAAGTCCGGCACCATGTAGCTCTGAGGGAGAATTAGGGTTGTCATGTTGCAACTGTTTGACACAGAGGAAAGCCGATAGGAATGGGATGATGCGTTGTTGATGTGTTCTCTGAGAACAGTTTGGGATTTTTCCTTCCTCATTTTGGGTTTGACTTTATTTCTTGAATTCAGGAAGCTCCTGGAGAGAACCTGAGTTGCCATGGTGATGGCAGGTAGAGAAGCTGTAGGGCTTTGCCTATCAACACAACTCTCTGTGAAGCTTGATTTAAAACCAGACGTGAAAATAATGAATAAAATCACCTCTAAGTaaaacttatttttttatttttcgttTTTTACCTCAAAATTAGAAGTATGTGGCCAGGTCTGGCTTTTTAGTGATTAATTGACTGCAAAACGTGAAGAAGTACTTGTGGAATTTTCGCATTGGTTTTCATCCTGCACTGGTTGTCCAGATGATGTCTCTTCCCTTGCTGGTGGATTGGACACTCACCAATAAGGTgtctcatccctttctctctggaTTGGACACTGTCTACCAGCCTGTGTCTAAGAGACTGCAACCAAGATAGTCACCGGCCTTTTGGCTGTAAATAAAGACTTACTTGAAGTTGTTATGCCTTTCTGTTTGTACTGTAGTAAAAGGGATGTTCAATAAAGTAACACCATGGCAACATTGTACGTATGCGTATATGAGATGCGGAAACTGAACCAATATACCAATTCAATGTAAGAAACCTAACCTGTGGTAAACATGTAGTTGAACTTGTATAtagtttatgtattttttttatttttatggtaTAAATGTTGTACAGGCCCagacagaacaagcaaggagaTGTGAATGGCATTGTCAAAAAACAAAAGAGTCAACCTGCAAACAAAGACATCACATCAAAGGTTTCTTCTTCCTTTGTGTTGTTTTCATCATTTTCTGCTTGAACACACGTACTCAACACAGCACTGATGGTTGTGTTAAGAATATGTGGTCATGGGGATGTCAACATCATACCACACATTGTATTTATGAGTTAAAATTCCATTTGCACGCACATGGATCCTGACGTTCTCTCTATTATTCATATTTAAGACAGTAAAAGGAGTGTATCATACCATTTTTCTTTGCCACAGTAAGGTTTGAACCCACTTTTATTTTGTAATACTGTGAGAATACTGTTGACCGTGGCCCCTTACCCCATAGTCCCTCATTGTTCCAACAGCTCTAGAAAACTACACGGTAACCTGTGTGAAGTCAGTCCACAACCAGACTGACTGATTTTGGTTACCGGGCTGATGTTGGGTGTTCTAGTGGCCAGTCCTGAGCACTGTTTGGACTGAGCCTAACGCTTCTCTAAGTTGGATGAGAGCTCACAGACTCGGTCCAAATCTGTCAGCCTCCATCCACTACAGTCCAACAGGCTTCCCCTTTGAGCCCTGTGTGGCATGGATGGTGAAGATACCCATACAAAATAGGAACTCTGCCCATCTGATCCAAATACCCATACAACTTTGTGCCCAAGAAAGCTCTTTAGACACACATTTTTACATTCACATGTTAGCAGATTTTCTTATCCAGAGCATCTtacaagagcaattagggttaagtaccttgctcaagggcacatcaacagatttttcaactAGTCGGCTCGGAATTTGATCCAGtgacctttcgtttactggcccgACTCTCTTAAGCGCTAGGCTACCGGCCGCCCAAATCAGATTTCATACTGTACACTTTGCCATCTTTAAAGCAACCTCTTGCCTGTTCGAGTCTGATTTATGTCATGCTTTTAACATGCAAATTATGCTGGAAAGTACTGTTACAATATTCCTTTTAATCTAAAATGTGATACCTTACCTAGACAACTCCAGTGATGCTTGAGCAGTTAGCGGTAAATGTGGTGAAATAATAACAGCAGCACAGTGGTCTTACCTTCCTTACTTCTTCTCCCCGTGGGTATAACATCCTCACTGTCATGTCCCGGTGTCTCATTCCACTTCTTGTTTTCAGTCCTTCAGCAAGGAAATGTAAGCACATACTGGCCTATACTGTAGCTGCCATGTTGAATTATATCCTGTGCTGGCCCAAGCCCGCTCCTGCCACTCTGCTCAGTCATACAGTTGTGTGGTTGGACTGCCTTGTATACGGCATGCCCTGCTCTGCATGTTTTATGCTATACCATTCGACTCATACAATATGACAATTCAACAATGGCTGTTTGCGTTGTCTTTCCTCTGTAAAACACACCATTGACGTATAGCGTAGTCATGGGGGTGGGCTACTATATCCTATTAGTCTAACCTTTTTGGAATATGAGAATACCTGTTGTCACTAACGTAGCAGTATTGTGTGGGCAATGGAATTGAATTGTCAGCTAAGGTAGATTAAAAAAATCTGATTTAGCAGCATGAATCTCAGGCTGTTATTCCATTATCAATCATATCAGCATCATTCAGTCACTGTTGTAATGTGCACAGATCTTGATTTCATACACAGTTTACTATGAGATACATACTTTCATTTGAAAAACGTGTCATCCCTGTCTGTAGTTTGTCAACCCTGCCCTCCTCTGTCCATTACACTGTCCCCTGGTTAGATTATAGCCTACATGCTGGGCACACGGAGACATGGAAAGCAACCAAAGTTATACACTTCCACCATCTGTTGGTCATATATGGTATTGCTTAAAGTACACGTACCCTGTGGATAATTGTCTGGTATGTGTGAACTCAGATGGACAGACCTTTCCAACAGGAGAATAATGGGCAAAGAATTAGATGATGAAAacaaatgcatttcaattcaTTCTGTgtattttattaaaaataaataagtcATACGGTTTTAATAAGAAAATCAATAAGAACATTAAACTAAGAGGGTGCTCTCTGTCGAGAGGAGCTGTCACCAACAactaaatcatgttttttttcctACAGGAATAACATAACATTTTTCTTAACCACAATGCTCATCAGTAAAACTGAAGCGTACATTCAAGTACATTTTTTTCTCAAACATACATAAGCTATATTTTCAAAGATAAACATTTAAAGTCTGTGGTTTGCTTTATTTACAAAGGTAAGATTAACATCTTTATGTACAACTAGACTGTGTTCACATTTAAATGATTTTTTTAAAATgggtattttgtttatttatacctTTTGTCTTAAATGAGTATTTTTAAAGTGCCTTTTGTGCACATCATTAGTTTTTAATGAACTTGTTCAATTACTTTTTTTAAACTATATGGTATGTTGTCAGTCATGTTTGGTATAAACTTTTATCATATTTTTCCCTTCAGTGTTACATCACACACATCATTTCATCTGAGGAATATGTGAAAACAAGAATGATGTAAATATGTACTGTACACTTTGCTATAGAGGAATTGCTACTCTTCAGATGTCTACTAACAGAATGACTGAAATGTAGTATTTACTTGTAGAATGTATTACCTAATATGTTCTAGGTGATTCATGGAAGGGTAATAGATTTATGAAGAAGACTACTGTACACTCAACaataatttcatatttttttcagttCTCTCTTATACTGATCATCCTCCTTCATAGCTCAAGCATCATTGCGTTGTTGTAGGCAACAGTGGGTCTGTCAATATATCCTAGCTCCTCTACTTGCACGGTTTATAAGACAATTGGTGCACTCTTTCCTCTCTAAGCTCTATGTGATTTCTGGAATGTATGCTAAAAATAGGTCATGTCTTTTGTATGTTGGATAAGATAACAATGCTTACAAAGAGGCATTCAGAGACCGGCTGAGTGGCTGAGTGCCTATATTGGTTAGTGTGAGTTGTTGTCATACTGTTTaccctcttttttctctctctctctctctctctttaacatgTGTCTAGTGATGCTGTCTGTTCATGAGTGTCTGATTGGTTGAATCCCTTGTGATGTAATGGATGTTGAGAACCCTTATGTccaaataaaaacaaatgtttccCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1682131 lncRNA upstream 556 60264720 ~ 60264923 (+) True G1470713
TU1682107 lncRNA upstream 4479 60260502 ~ 60261000 (+) True G1470689
TU1682119 lncRNA upstream 14423 60250852 ~ 60251056 (+) True G1470701
TU1682097 lncRNA upstream 17595 60246859 ~ 60247884 (+) True LOC110494259
TU1682081 lncRNA upstream 72260 60192910 ~ 60193219 (+) True G1470666
TU1682196 lncRNA downstream 497 60383908 ~ 60384114 (+) True G1470776
TU1682197 lncRNA downstream 1885 60385296 ~ 60385558 (+) True G1470777
TU1682712 lncRNA downstream 31947 60415358 ~ 60415567 (+) True G1471243
TU1682719 lncRNA downstream 35258 60418669 ~ 60419077 (+) True G1471250
TU1682730 lncRNA downstream 42547 60425958 ~ 60426167 (+) True G1471261
XM_021569193.2 mRNA upstream 17569 60244785 ~ 60247910 (+) False LOC110494259
XM_021569192.2 mRNA upstream 17569 60244917 ~ 60247910 (+) False LOC110494259
XM_021569189.2 mRNA upstream 170109 60078750 ~ 60095370 (+) True LOC110494256
XM_036950349.1 mRNA upstream 187042 60063250 ~ 60078437 (+) False LOC110494255
XM_036950350.1 mRNA upstream 187042 60063250 ~ 60078437 (+) True LOC110494255
XM_021569200.2 mRNA downstream 50515 60433926 ~ 60508595 (+) False rad18
XM_021569201.2 mRNA downstream 50546 60433957 ~ 60500984 (+) False rad18
XM_036950355.1 mRNA downstream 50546 60433957 ~ 60508595 (+) True rad18
XM_021569203.2 mRNA downstream 192267 60575678 ~ 60599614 (+) True LOC110494264
XR_002469241.2 mRNA downstream 586913 60970324 ~ 60971719 (+) True LOC110494272
TU1682011 other upstream 161472 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 1757594 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2651179 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2717301 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2781890 57478797 ~ 57483589 (+) True G1467159
TU1683229 other downstream 589067 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1172908 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2315092 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2326928 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 2833537 63216948 ~ 63217594 (+) True G1474159

Expression Profile