RNA id: TCONS_00047179


Basic Information

Item Value
RNA id TCONS_00047179
length 3286
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_023444
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22118804 ~ 22732001 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAGCTTTATCGAAATGATATTGCGGTAATCCTCGGTGATCCGATTTGAGTTGTAGTCACAGGGAAAGGCGAGAGGTAGTAGTATAATAAGCGTCAAAACAGAAGTACCAGGAAGATGCTGCagataaataaatgcacactGATAATCCTACAAAAATGGCACATTGTTAGACACAGTTTCATTCACCCGAATGCGAGacattaaaaacaatttacatAACACGGTTATCTGGCCAACACCACGCAGATGCACCACAAAACGGCTGCACTAATTGGTAAACATTCCACGTGAATAAGCCCTCATTTAACATTCACTTTCATAATATACACGCTTTCTTGTAAATCACGAGTTTCGTTTTGATTGTGGCTTACAATGACCGGGAATCCCCCTGTAATTATAGCTATAAATACAAGCTTTTCCTGTCGTCCTCCTCCAAACTCCAGCCGCAGACGGGGCGCGCTCGTCAAGCCATTGAAGCGCTCATAATCCAGAGAAAATAAACTTCTGTCACCGGAGAATCTCATCGCTTTCGTTTTCTCTCTGCATGGATGGGGCTATATCGCTTCGAGCCATGCGGAGCCGCGCGTTTGGACCGAGCGGAGAGGGCAACTTGCCGAAAGGAGTGGCCTTCCCGGTTTCCACATGACATATTGACAGATGGTCATTCTGGTTTGGTCGCATTGTATCGTCGGAGAACGTCAAGTGCGTAACTGTGTCTTAATTCGATTCCAATAAGGACAGCAggttttattgtttaattcatttaGGATATCCTACATATGGTTTTAACAAATCATGATGTGCAACAGGTTCAATCCCTCCTCCAGGGCCACATAAATTACAGGTGCAAGAAAAGGTAGCATGCTAGAATAGTATATTTGAGTGGGATTTAAGtgcatttaattacttatttctttgtttatttaaaagttttgaaTCATGTTGCACGGATTGGCAGACTAACAAACTTACATAATAGGTTTGCCTTAAAATAGACTAATAATTTGGAGGATTAAGCAGTAAGGATTTAGTATTACAGTGCTCAGACCCCTCACAAATTTatctttttaattcatattttaatagaaagctatacaatattatatttgtgcatatacattagattagtcagtactaaagccaaatctggagattatctaacaaaataacttacgataaaggtccaaaaactagtacactcaaatttatgtaatagaaaaatattaaatacaaatttacaaatgaaaaaaaaaatcaagcaataTCTTGCTCTAATTGTAttctctttcaatttctaaatacgtttggtgactaaaatattattttaataaatatatctgtttaatcagttttgtttaaatgaaccaaaatacattgcctatatgcactgagaaatggacaaaaatattcattttcaaaatggggtgtactcagttatgctgagcactttatagGCTACATTTAACACCATGCTAGCTTCTGGCACCAGTTtgaaagagggaaaaaaatgaaCGCAAGCAATGGAATACTGAATACTGAAATAAAGTGATGAATACATCAAAAACATAACAGTTTGATAAAAATCAATAGTCagcctacattttattttaggtctgttatGTGTGTAGTTAGGTCTGCATGCATGCTGATTAAATTATGTTTGCtcagaaatcattttaagtaGAATATTAATAggtccatttattttatttatttccgtTTATGCTATATGGATAGCCTATGACAAAACATCTTGACagcttaatattgtaatgaatggAAGAAATATGTTTGAGCTTGCATATGTAggttatataaatgtaatatgttttttttgtatatgtatatttctctaatgataaattaatataaattgttAGTTGAAAAAAAAGCATCACTAAtctaaaataaatcaagtttttgATTCACCAAACTGCATGTATAGCATCAAGCAATAAACCATGCACATTGGaattagttacaaaaaaaaaaaataaaaataaatagagatGACACAAAAATGACGTTACAAAGCACAAACAGTATTTTGCTACCATGAATAAATAACATGCATTCACTTTGAAATGGGTAGACAAAATGCCTGGAAAAAAAGATGTGGAGAGAATtttggtggaaaaaaataaattatttgtgaTTACAATTATTGTGATGTAAACTTTTGAAAATGAGATGAACACAGTATTgctaaaatatttcaaaacatcaaAGATAAATGTAATGTGTGCGTTATTGCTCTTAATCTCCAATTCACATgcttaaaaaaatagaaataaaatactgACATCATGAAGGAAAATCTTTAGCTTACTAAACAACCTAGTAACCTGGATTATGTTTAGTGTTACCATGCTtgcattttttgcttttattaatttaatctcaGATCCAGTGGGAAACAGGTGTGGATGAACTGAATTGCTTGAGCAAACAATTTCTACCATAAATTTTAAAATCAAAGTTTGCTCcagaataaaatgttttgtaagcCTTGATGAAAGGTTCTCTGTCCTAGCAGCTGAGAAGGATTTTTCTTCTTTCAGTGTGTTGCTGTGCAGTTTCTATGGTAAACACGTTTGTTCCCACTTTATTTCCAAAAAGTTGCTAGGAGGTTCTATGTGTGTTTTTTCAACTGTAGGTAGGTCAAATATCCCCAATTACACTCAGGAATAACAGTATGACAGTATAACAGTAACAATATATTGCCACTACAGTACAAAAACATGAATAAGGCACATTTCATTTACACAAATTGTCATTAGAGTAGAACAGTAGCATTAATATGAGTATTCTAGATTTATCCTAGTATTcagtttttgagattttaaaaaaaaatcgaaaaagtcttatttgttttattttggccagaataatagcagttttaaattttttaaacaccatttttgggacaaaattattggcccctttaagcaaaattttttttcgatagtctacagaacaaaccactgttatacaataccttgcctaaatacccttacctgcatagttaacctaattaacctagttaagcctttaaatgtcactttaagctgtagaagtgtcttgaaaaatatctagtaaaatattttttactgtcatcgtggcaaagataaaataaatcagttattagaaatgagttattaaaactattatgtttagaaatgttttgaaaaattgaaaaaaatcttctctctgttaaacaaaaattgggggaaaaataaacaatagggctaataattgagggggctaataattctgacttcaac

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0060997 dendritic spine morphogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0005912 adherens junction cellular_component
GO:0005634 nucleus cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005737 cytoplasm cellular_component
GO:0045296 cadherin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046373 lncRNA downstream 26866 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046370 lncRNA downstream 578596 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046367 lncRNA downstream 650985 22071221 ~ 22077479 (-) False XLOC_023443
TCONS_00046366 lncRNA downstream 654192 22071221 ~ 22074272 (-) False XLOC_023443
TCONS_00047177 lncRNA downstream 661633 22053809 ~ 22066831 (-) True XLOC_023442
TCONS_00046376 lncRNA upstream 18957 22750958 ~ 22756509 (-) True XLOC_023447
TCONS_00046857 lncRNA upstream 146940 22878941 ~ 22923061 (-) False XLOC_023448
TCONS_00046856 lncRNA upstream 146940 22878941 ~ 22923061 (-) False XLOC_023448
TCONS_00047181 lncRNA upstream 147859 22879860 ~ 23193663 (-) False XLOC_023448
TCONS_00047180 lncRNA upstream 147859 22879860 ~ 23193663 (-) False XLOC_023448
TCONS_00046368 mRNA downstream 26447 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA downstream 194505 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046364 mRNA downstream 624879 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046363 mRNA downstream 712713 22014810 ~ 22015751 (-) True XLOC_023441
TCONS_00046362 mRNA downstream 725433 22002090 ~ 22003031 (-) True XLOC_023440
TCONS_00046374 mRNA upstream 8542 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046375 mRNA upstream 9532 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046384 mRNA upstream 509443 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA upstream 509443 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA upstream 510313 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046372 other downstream 356364 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 419406 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 630701 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 760348 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 765296 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046386 other upstream 541241 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1239055 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 1370720 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 1403901 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 1403927 24135928 ~ 24146875 (-) True XLOC_023462

Expression Profile

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