RNA id: XM_021569201.2


Basic Information

Item Value
RNA id XM_021569201.2
length 2161
RNA type mRNA
GC content 0.48
exon number 13
gene id rad18
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 60433926 ~ 60508595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCCATTGGTCACGAAGAGCAAACCGAGACAGGAATTGACATGATCCTCCCGGAAGGGTGCATTTGGTATGAAAATAAATCTGCGCGGTATTATACAATGAAACATAGCTAGTAGCCCCAGTTTCTTTCTAAATGCGTTCTTCTAACCACTGTTTATAGAGAACTATCACCATGGCCAATTTTAATGAAGCGGATTTACCACCAAATCTGACTTGCCTCAAAAATGTTGATACCCTTCTTCGATGTCCCATTTGTTTTGAGTTCCTGAGTATCGCAGTGATGACAAAATGCTCTCACAACTTCTGCTCTTTGTGCATAAGAACATTTATGTCCTACAAGTTGCAATGTCCAGTGTGTAATTCACCTACAACAGAACAGGACCTAAGAAACAACCGGATACTGGATGACCTGGTCACAAACTTTCAAACTGCAAGGCAGAAGTTGTCAAAAGCTCATTTCGACTCGCCTCCATTATCCCCGGAGACCCCAGCCTCTACTGTCAAGtgtaaaacacacagacagaccaggggCCCCAAGAAGAATGGCTCCATCCTCAGTCACTTTTTCCAGAGGGGGCCAATCACTTCCACATCATCTCTCACTACAGAGGCCCCGCCATCACTTCATACACAAACTGTGAAAGTAGACCCTGGTCATCAGGTCTCTGTGAATGAGGAGcccatggaggaggagataccGGCCCAGGTGCTGGTGTCTGTGAAGATTGAGAAGATGGACATCTCCATGACAGGGCTGTCGTCTCTGGCTGACTCGCCGTCCACATCACAGGACATGAAGCCTGTAGTTAAAGtGGAGTGTCCTGTGTGTTCTGTGGGCATCTCTGAACAGCTCATCAACAAGCACCTGGACACCTGTCTGACCCGAGGGGAGAAGAAGGAGAGCCTTAGGAGCTCCCTAGGTGCTAAGAGGAGGCCGATGGGGAAGCTGGTGTACACACTGCTGTCCATGCAGGAGCTGAAGAGGAGGCTGAAGGAGTGCCACCTCTCTGTCCAGGGTAACAAAGATCAGCTGGTCAGGAGGCACCAGGACTTTGTACACTTCTACAATGCCCAGTGTGACGCCCTGGAACCGAAATCAGCCAAAGACATTGCCAATGAAGTGGAGGCCAACGAGAAGGCCAGGAACCAACTTCAGGGGAAAACCAAACGTGTCATGGACTTCTCAAAGAATCAAAGTGTGGAGAAGATCGACGAGATGCATTCAACTTACAGGAAGCAGCATAACAGTGAGTTCTCCCGCCTTATCGCCCAGGTCCGGGGTCGCCTGGAAAAGACCAGGAAGAGGGAGATGAAACAGAAAGTGAGGGatgagggagtagaggaggaccGGAGAGCGGGCTCCAGCTCTGCAGATAAAGCAGCAGAACAGGAACAGAGGGATCCCAGTCCCAGTGACTCAGAGGCCTTCTGCATATTGATGACATCACCAGTACCGGAGCCCTCTGAGGAGCAGCAGCCTTCTGTTGTAGAGGTCATTTCCAGGTCACCCAGCTGTCTCAGTGACGTGTCCATCAGCAGtTCCATCTCCGACGTCTTCGCTGACAGATGCTATGAGctgcaggctgctgatgagctggttgctgatgggctggtcctggggctggcttgagggtcaatctcatcctcttcttccaagTCACTGTCAGACTCCGAATTGATAGAGACATGATCCTCATACACAGAAAATTCTTCATCTTCCAAAGTGGAAGAGActccttccacactagcttctctctctgtAAAACATATTTCTATGTCCCTCTGAGCAGAGGTTatttttgccatactgattgattgtggtaaggagccacacatgcaaaactatttatttgttgtgtccctCCCCCCCTCATTTTTCTTTTtacaatgtatcaaaataatgtattgtaataacattgtgcaggttcACGCAAAACATTGTTTAATTTCATACACTACAAAGGGTAAAGAGTGCCAGAAAagcgggagacaggcagggagacagacagacaggttattggTGCTATGTTGAAATAGCAGGCCCAGGGGGGAGTGAaggcacacagcaaacctttttgttaatattttatttgttttcacccacacacacacttttccacactTTTATTTCCATCTGGTCCAGGGTAATaaaaagaatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1682734 lncRNA upstream 6196 60427558 ~ 60427761 (+) True G1471265
TU1682730 lncRNA upstream 7790 60425958 ~ 60426167 (+) True G1471261
TU1682719 lncRNA upstream 14880 60418669 ~ 60419077 (+) True G1471250
TU1682712 lncRNA upstream 18390 60415358 ~ 60415567 (+) True G1471243
TU1682197 lncRNA upstream 48399 60385296 ~ 60385558 (+) True G1470777
TU1682754 lncRNA downstream 7647 60508631 ~ 60509137 (+) True G1471279
TU1682872 lncRNA downstream 9477 60510461 ~ 60510808 (+) True G1471395
TU1682871 lncRNA downstream 9886 60510870 ~ 60511105 (+) True G1471394
TU1682955 lncRNA downstream 106434 60607418 ~ 60607656 (+) True G1471475
TU1682929 lncRNA downstream 115191 60616175 ~ 60618887 (+) True G1471451
XM_036950353.1 mRNA upstream 50546 60265479 ~ 60383411 (+) False srgap3
XM_036950354.1 mRNA upstream 50546 60265479 ~ 60383411 (+) False srgap3
XM_021569197.2 mRNA upstream 50546 60265480 ~ 60383411 (+) False srgap3
XM_021569193.2 mRNA upstream 186047 60244785 ~ 60247910 (+) False LOC110494259
XM_021569203.2 mRNA downstream 74694 60575678 ~ 60599614 (+) True LOC110494264
XR_002469241.2 mRNA downstream 469340 60970324 ~ 60971719 (+) True LOC110494272
XM_021569217.2 mRNA downstream 513741 61014725 ~ 61018741 (+) False LOC110494274
XM_021569218.2 mRNA downstream 523724 61024708 ~ 61037602 (+) False LOC110494275
XM_036950360.1 mRNA downstream 523724 61024708 ~ 61037602 (+) False LOC110494275
TU1682011 other upstream 329950 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 1926072 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 2819657 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 2885779 57498382 ~ 57548178 (+) False LOC110494206
TU1678132 other upstream 2950368 57478797 ~ 57483589 (+) True G1467159
TU1683229 other downstream 471494 60972478 ~ 60999063 (+) True G1471723
TU1684022 other downstream 1055335 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 2197519 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 2209355 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 2715964 63216948 ~ 63217594 (+) True G1474159

Expression Profile