RNA id: XM_021569221.2


Basic Information

Item Value
RNA id XM_021569221.2
length 4302
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110494276
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61039278 ~ 61043722 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaatgcAGCTGAGCACCAGCAAGAGACCATTGTTAGCAATGtttctgtagcgctcatgtgattgcagaGTTTGCTAAACAATTGGCCACTgtattgatgcaaataatcatgatattatTCTGCTAGGTAGGCATGGTCTACTTTGTTTGCTGTACAGGGTCTTCATGTTGCTCTACACCCTGATTTGGTGTATGTACTCTGGCCTGCTGTTCTCCAATCTCAAGTGGCTTCTTCAGCCACCTGACCTACTGCCTGATGGTCATCTACCACCTGGTTGCTTCCTGTAACCTGGCCTGTGCCACAGTCCTAGTCAGGTGCCACAGCAGGGACCAAATAAAGACCTGCTCTGGAGGGGACCAAACTAGAGAGCGTGGAATCGGAGCAGAGCCCTTGggtcctttccctctcccctctctcctcttcatctccccgAGACTGCAGTGGTTCCTCCACAGCCTGATGTGTGCCTTCTGCCTCGCTGTGTCCTTCCTCTACTGGAGCCTTGACTACCCCATGGAGAACCACCCTCTGTCCCCATTCAACCTCAAAATGCACATGGGAAATTCTGCCCAGGCCCTGCTGGACCTTCTCCTATCAGCAACGCCCATCTACCTGGCCCACTACCTCTATCAGCTCCTCATTGGCTGCCTTTACATCCTGTTTGCTGTGGTCTACTGGCTGGCAGGCCAAACCAACCTCAGTGGAAAGCCCTACATTTACAAGGTACTGGACTTTGGAGGGTGCCCCTTGGTGGCCACTCTGTGTGTGCTTTGCTTTGTTCTGGTCTGCTTTCCCCTCTGTCACTTCCTGGTGTGGAATGTGCAACTGCTGAGGAGGCAGCTGGCGGGCAGGGTAAggggagagaggctgagaggcttggtggtggggggagggggcgGCCCGGTGCCGGTCTCCCTCTTGGACCCATTCTCCTCAGTGTTAACCcccaggaggaggggagaggtctGCGGCGATGGGGCCACTCAGTCCCTACTCTCATCCACCACCAGTCATTTCTACAGTGCTGTCACTGTCTACCTCTGAGGTCCAGTCTGAACTAACATAGAGCTTGATGCCATGTTGTTTTACATGTTCTGCATAATGTCATCCATCTGTGTTGTCCTGTCCCTGTCAGGCCAAACAATACGATGCTTAACAGATCTTCTCTTCACTTtgtagtgtgtggtgttatagttgCCTGATCCAAAAGGTAACATCACAGTGGCCAAACTATGTTAGACTTTGTATCACCAGGGGGCAGTAACAGTATTAGTTGCTTTGATCGAACGTGTTCAGCCTTAATCAATTCAAATAGTAGGATCAATAAATTAGCCAGCTTACATGATTAACACTGAAATTCTAGAGTAGGCTCAAGTTGGGAGTGGGAGTAACAAGTCATTAATAACATGCTGGTTTTAGGGTTGTTGTTTTTTCTGAATATTGTACAAGTTTGTTAAATTGCATATTTTATCGAAACTACAAAACTGTGGATGGATCCTACTTGCAGAATACACAGGCCACTGTTGTCCTGTCCATCCTCACACAAAGCAAATAACACAGCTGCACATGAAGTCTAAAATATGAATGAGGCTTATGTGAGCAGACTGGTGTGCCAATAAGAGCAATGAAGAAAATATATGGTAATTTGACATTAAGAAAATTGTGGGACTTGCTCTACCTGTTTAAAATAATAGTTGTGGTCGTTGAAGAAGTtattacagtttttacttaaacaaaacaaacaaagcaGTTAAAATATAGTGAAAGTTAAATGTAAAATAATTGGTCTGATTACTTTGATATACTACTATATCAACCTTATTACTTTGGATAGAGGGGAAAGTTAGATCACACATTTCATCAGAAATAACTACACTCGGACTACTACATTTTTTTATACTCTCCTACTAAAATACCACAGTATATGACAACGTAATAATAGAGCACAGAAGACAATGAGGCATTGTTGAAGTTTTAAACAAgtcaaatattttattttttacaacttaTTTTGATGACAGAGCGATCAGTGGGAAGAGGGCCGGAAAGGGGGAACCCCTTCCCTCAGAGCACCTCTGCTTCCAGGGGGGACACTCAAGTTAACTGAGCATAGCATATAAAGGGTccgttttagttttttttttatgtaatttTCTCCGTTTCTCcagttgttgtttttattttttcagGTTTTCCCTCAAAATCACACTattaatagaaaaacaacaatACTTAAActacatcaggagaccacttttgaggtctggaaatgttttattaaatgtagatttttgggtgtagttaccctttaatgcAGCTGAGCACCAGCAAGAGACCATTGTTAGCGATGtttctgtagcgctcatgtgattgcagaGTTTGCTAAACAATTGGCCACTgtattgatgcaaataatcatgatattatTCTGCTAGGTAGGCATGGtctactttgtagttaacatttaattgaggaggttttgggaaagcctttccatctctaccagaagaaggttATCGTTAGCATCATCGCAAACGGCGACATAAGGTGTAGACATACAGTACGCGCGCGcaccgcgcacacacacaagttcaatacatttagtattgGAAATTAGTTGCGCTATGAAGACAGCTCCCTCCAAGGCATGTGTTGCTAGGCAACCCCCCTGCAATTACCTGGGCAGTCCTGCTCCCTCGATGGCTAAAACCAGTGTGAGAAACGTgctaatttagcagacactcttatccagggttaagtgccttgctcaaggggcacatcaacagatttttcacctagttggctcagaGATTCAAATCGGTCACCTTTCAGTtagtggcccaatgctcttaaccgctaggctacctgccgcctaacAAAAGTTTGTGGTAGTGTTGTTAGACAAAGCAAGGAAAGTGAACTTCAAAACATGATGTAGTTTTATTGGAATCTGCAGCTGTTGTTGGTAACTAATGAATCTGCTAGCTTCTGACATGACTTACTGCATCTTTAATGACAGCAGTTGATATATTACTACAACGGATCTACCTCTTGAATGTTAGAAGCTATTCCTGTTCTGAGAATTAAAGGACGATTTCATACGTTCAAAGTTTTTGGTAAAGTGGTCAaagtagctgatttgtgtcaaaagttACATTGTTTACAGTTAATAGAATATAATGTTGGGAGTCATGTCGTCACAATGGCCCTTTAGAATTCTGAGGAAATCCCATGAAAGTGGATGGAGGAcaaaaaataagtttaaaaaaagcgtaatctttttttttttaagtataaaaGATATCAAAACGTTGTATACAAGCATACTATTTCAGAACAATCGGCACGTTTTAAAGTTTGAATGACGTTTCTAGCTTAAACAGTGTAGGAGGAGTAGTGTTCCAAAGAAAAATAATATGAAGTATGATGAAGATTTAGAATGGGACATTTGCTTCGCAAGTCCCATTAATTACACGCAACCACCCCCCAATTCCTTATTCGTTTGTCACATAAAGAACTGACACATTACATTATAGCCAAAATGTACCATACTCATATTAGTATGCCATCAGTTGGAGGTAAGAGCACTACAACACACCTTTCTATCCCCCAGCACTTGGGGACTGGTAGTAGCCCAGTCTCCCTCCTGAATTGGGTGGATTAGTGTAAAGTGGGGGCAAGTCGTGACATCCCAAGTTCTTTACTGGAACTCGGCTTTTAAGGGGCAGCACAAATAATGGTTTATTCGAGCAGGTTTCATTTACTTAACAAAGATGAGGATAATAGCCCGGCAAAATTCCTGCTGCTTTCATACAATCACATCAGGTGGTGTGTGACCGGATTGGCCTGCTTGGCCCGAGTCTCCTCTCTGATTGACAGCGTGACAGCCAGGCCTCAGCAAATTAAGTGACATTAAGGCAGTCCAGTGACAGCCAGCCTTCATCTCCTTGTTGATTAATACCACAGCGACAAAATGAGAGGTCTATTCCATCTGCAGACGGTAAATGGGAACATTTTGGCAGTTGTCATCTTAGTACAACTAATTGGGGACTTGCTGGAATGCATCATATCAGTTTACAAGGAGTTTTATTTAACACAATAGCCACAGATGCACAGTCATGGGTGTAGATTTTAAGTCTGAAGAAAGGGTTAAATGTGATGCTATCTTTACTGACATTTTACCTTAGTACATATTCCTCGATTTTTTCCCAGATTTCCAGAGCATGATCTGTGATCTCTCCAGACAGAGGGTTTTGaccattatacagtgccttgcgaaagtatttggcccccttgaactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1683304 lncRNA upstream 763 61038308 ~ 61038515 (+) True G1471796
TU1683238 lncRNA upstream 16119 61022612 ~ 61023159 (+) True G1471732
TU1683225 lncRNA upstream 20091 61014736 ~ 61019187 (+) True LOC110494274
TU1683303 lncRNA upstream 33450 61005602 ~ 61005828 (+) True G1471795
TU1683302 lncRNA upstream 33938 61005067 ~ 61005340 (+) True G1471794
TU1683226 lncRNA downstream 89456 61133178 ~ 61135571 (+) True G1471720
TU1683361 lncRNA downstream 93497 61137219 ~ 61137589 (+) True G1471853
TU1683362 lncRNA downstream 97052 61140774 ~ 61141184 (+) True G1471854
TU1683363 lncRNA downstream 99720 61143442 ~ 61143759 (+) True G1471855
TU1683366 lncRNA downstream 100954 61144676 ~ 61144955 (+) True G1471858
XM_021569218.2 mRNA upstream 1676 61024708 ~ 61037602 (+) False LOC110494275
XM_036950360.1 mRNA upstream 1676 61024708 ~ 61037602 (+) False LOC110494275
XM_036950361.1 mRNA upstream 1676 61024708 ~ 61037602 (+) False LOC110494275
XM_036950362.1 mRNA upstream 1676 61028430 ~ 61037602 (+) True LOC110494275
XM_021569217.2 mRNA upstream 20537 61014725 ~ 61018741 (+) False LOC110494274
XM_036950365.1 mRNA downstream 10909 61054631 ~ 61129366 (+) False LOC110494279
XM_036950363.1 mRNA downstream 10909 61054631 ~ 61129367 (+) False LOC110494279
XM_036950364.1 mRNA downstream 10909 61054631 ~ 61129367 (+) True LOC110494279
XM_021569224.2 mRNA downstream 101789 61145511 ~ 61257368 (+) True LOC110494281
XR_005037030.1 mRNA downstream 111173 61154895 ~ 61159504 (+) True LOC118940484
TU1683229 other upstream 40215 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 935271 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 2531393 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 3424978 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 3491100 57498382 ~ 57548178 (+) False LOC110494206
TU1684022 other downstream 512597 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 1654781 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 1666617 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 2173226 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 2614722 63658444 ~ 63663254 (+) True srsf3b

Expression Profile