RNA id: XM_036950364.1


Basic Information

Item Value
RNA id XM_036950364.1
length 2878
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110494279
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61054631 ~ 61129367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGAGGTTGCATGCAGTAGGCGGAACCTGGACACGCTCAACATCCCACATTCAATAGATTATGAGCTACATTTTTATAGTGAACACATTACATTTACACAGCAATTGAGAAGGAGCGCACACGGATCTCATAAAATATTGATTGCCGTATAACAGGTAACGGAGTGAAGAGCCAcaagacaaagaaaaaacagcaaAGAAGCAGATGCAAGATTCGTGTGGAGATATTCGGACTGAGTTCACATTGGCACACTAGTTATCTCTGACTCCTGAAGGAAAAGAggacatcagacacacacacacacacacacacacacacacacacacacacacacacacacacacatccatcagCAGAAAGATGAGTGACGATAAAGCAGCTGAAAGCGTTGAACCTGCTCCACCAGCTCTAGCACCAGCGGCAGCACCAGCTCCAGCTCCAGCACCAGCACCAGCTCCAGCACCAGCACCGGCGCCAGCAGAGATGAACTCTATTCCCAATGGGAAAGGCCATGAGCCTGGGGAGGAAACCACAGCGGAAGCCAAAATACCACCAGGAGACACCACAGAGCAGGAAATTGTTCCTAATAGTGTCCAAAATGTCAGAAGTGAGGATCCAGAGGCTAACCTTGCAGAGAGTCAGGAGTTCCTGTCTAGCATGGAGGACAAGAAGGCCACAGGCTTCACAGACTTTGAGGGGAAGACCTCTTTCGGAATGTCAGTATTCAACTTGGGCAACGCCATCATGGGAAGTGGAATTCTGGGATTGTCGTACGCCATGGCCAACACAGGGGTCGTCCTATTCCTgGTGCTCCTGACGGTAGTGGCTGTCCTCTCATCTTACTCCATCCACTTGCTACTCAAGTCCTCTGGCATTGTGGGGATCCGGGCGTATGAGCAGCTGGGCCAAAGGGCGTTTGGAACGCCAGGCAAGATGGCCGCCGgcatcgccatcacactgcaaaACATTGGAGCCATGTCCAGTTACCTGTATATCGTGAAGTATGAGTTCCCTCTGGTCATCCAGGCCTTCCTGGGGGTTGACAATCCATCAGGtGAGTGGTACCTGAATGGGAACTACCTGGTCATCATGGTGTCCATCAGTGTCATCCTGCCTCTGGCTTTGATGAAGCAGCTAGGGTACTTGGGCTACACCAGTGGCTTCTCCCTCACCTGCATGGTCTTCTTCCTCATCTCGGTCATCTATAAGAAGTTCCATACCCTCTGTCCCTTTGTAGACTTTGTCTTTAACAGCACAGCCAGTGTGACTGCTGTTACCAACGACACAGGTTACAACGAAGCCTGTGTTCCCAAAATGGTCAACCTCAACTCACAGACTGCCTACACCATCCCCATCCTGGCGTTTGCCTTTGTGTGCCACCCTGAGGTCCTGCCCATCTACACCGAGCTCAAAAACCCAACCAAGCAAAGGATGCAGCATGTGTCCAACATCTCCATTGTAGTCATGTACACCATGTACTTCCTGGCTGCTCTGTTTGGATACCTGACCTTCTATGGTGAGGTGGAGTCAGAGCTGCTGCACACCTACAGCCGTCTGGACCCTTACGACACCCTGATCCTCTGTGTCCGTCTGGCCGTGCTCACCGCTGTCACACTCACCGTCCCCATAGTGCTCTTCCCTGTAAGGAGAGCCATCCAGCAGTTGTTTTTCCccaacaagacattctactgGCCCCGCCACATTGCCATTGCTGTCACCCTGCTCACCCTCATCAACATGCTGGTCATCTTCGCCCCTAACATCCTGGGCATCTTCGGCATCATCGgtGCCACATCTGCCCCCTGCCTCATCTTCATCTTCCCTGCTGTCTTCTACATCCGCATTGTACCCGAAGAGGAGGAGCCCATGCGCTCTACCCCTAAAATCCTGGCTGCCTGCTTCGCTGGAATAGGCTTCCTGTTTATGGTAATGAGCCTCAGCTTTATCCTCATTGATTGGACGTCGGGGAGTAGCAAAGCCAGCAGCGGTCATTAGGCTGCTTCTATAAGTCTTCTGATTTTATATTGTAAATCTAGACCTGTATTGTATTTTCTCTGTGTTGTCATGGATCATATTTAGTAGAAGATGCACTATCTCTTCCTCCAGAATGAGTGGGCCATAGTGTCTAGAGATGGGGAATTCAATCTTCTGGAGGTTTCTGCTCCCCATTGGACTGCTTCTCACTCAAGGTCCATGGAATTGTAGCCCCAGCCAAACTGTGTATAGAGGGAAAGGCCAACATACTTTCCTGGGGAAGACGATTGTGCATTAGAAACAAATGGAAAGTCATGCTGGCTTGCTGAATCTGCCACCACCTCCCATTCCAGCCCAGCCCTGCGCTCCAGACCAGACCCATAATCTATTACCCTATAAACGTGTAATCTGTCAATCACAGCAAGAATCTAACTGCCACACTCTAGTCTAGATAACCACATAGCTTTCAGTAGGGGAGAAGAAGACACAACAGATCGTTGGAGGCTGGGCAGTTCTTTCCTATTTGTAGGCCAAGTCTACTGTGTTAAGTTATTGATGTAGTTAGGTCATGGCAATATTCGGTACAATAGCTGAGGGAATGTGGCATTAAAAGCTATTGGACAGAGGCAGAGCGGTGGTTACTGTGGCAACGTCCAGTGACCCGTGCTGGTGTTGTCACCCCGGTGGCCAGATGCTGTCCTTAATCTACACGCTCGGCTTCATTCCTCACAGATATCAGAGGATGGAACCATGCAACTGATATGcaactgtacagtgtgtgcagtCTTATGACTCTACCATTACAATACAGTatgatatatatacagtatcagtcaaaagtttggacacacctactcattcaagggttttacttcatttttactattttctacattgtagaat

Function

GO: NA

KEGG:

id description
K13576 SLC38A3, SNAT3; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1683307 lncRNA upstream 11106 61043306 ~ 61043525 (+) True LOC110494276
TU1683237 lncRNA upstream 13548 61040478 ~ 61041083 (+) False LOC110494276
TU1683304 lncRNA upstream 16116 61038308 ~ 61038515 (+) True G1471796
TU1683238 lncRNA upstream 31472 61022612 ~ 61023159 (+) True G1471732
TU1683225 lncRNA upstream 35444 61014736 ~ 61019187 (+) True LOC110494274
TU1683226 lncRNA downstream 3811 61133178 ~ 61135571 (+) True G1471720
TU1683361 lncRNA downstream 7852 61137219 ~ 61137589 (+) True G1471853
TU1683362 lncRNA downstream 11407 61140774 ~ 61141184 (+) True G1471854
TU1683363 lncRNA downstream 14075 61143442 ~ 61143759 (+) True G1471855
TU1683366 lncRNA downstream 15309 61144676 ~ 61144955 (+) True G1471858
XM_021569221.2 mRNA upstream 10909 61039278 ~ 61043722 (+) False LOC110494276
XM_021569218.2 mRNA upstream 17029 61024708 ~ 61037602 (+) False LOC110494275
XM_021569224.2 mRNA downstream 16144 61145511 ~ 61257368 (+) True LOC110494281
XR_005037030.1 mRNA downstream 25528 61154895 ~ 61159504 (+) True LOC118940484
XM_021569226.2 mRNA downstream 141118 61270485 ~ 61276247 (+) True LOC110494282
XM_036950368.1 mRNA downstream 224118 61353485 ~ 61458471 (+) False LOC110493231
XM_036950369.1 mRNA downstream 224118 61353485 ~ 61458471 (+) False LOC110493231
TU1683229 other upstream 55568 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 950624 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 2546746 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 3440331 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 3506453 57498382 ~ 57548178 (+) False LOC110494206
TU1684022 other downstream 426952 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 1569136 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 1580972 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 2087581 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 2529077 63658444 ~ 63663254 (+) True srsf3b

Expression Profile