RNA id: XR_005037030.1


Basic Information

Item Value
RNA id XR_005037030.1
length 4357
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC118940484
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61154895 ~ 61159504 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggcagtacgtccatctggcctcacaactgcagaccacatgtaaccacgccagcccaggacctccgtATCCTGCTTCCCCTGCAGGATTGTCTTAAAGGGGTTTGAGGGGTTGCTGAGGagtattctgtctgtaataaagccccttttgtaggaaaaaaaacattgtttggctgggcctggctccccagttggTGCACCCCtacctagtcatgtgaaatccatagattagggcctaattgatttccttatgaacattaactcagtaaaatcttttaaattgtttcatattgcgtttttatatttttgtttgttgTATGTAAAGATGTGTCAGCAGTAGCtgtactaaacacacacacacccagacagccCTGTGCTGTGTTCTGCTGAGCTAggctctgctctggtctggtcacGCTGTGGTGTGAGAGGCAGGGACAGGGCTCATTTGGCTGTGCCGTTTACCTCTAACTTCTCTGTGTGGGAGAGCAAAGTGGGCACTGCTGCATGTTAGCTAGTCTGCAGATGAGCCTGTACAGCAGTATAGGAACTGTTGACTCATTACAAAAGTGTTTTTTGCTTGGCCCATAGGCAACAATCTACCAAAGGTCTACTTTGCTCCACTGTTCTGTCATGTGGCCCCAGGACAAGAGAAGTCTTTGTCTGTTCCAGATATAGCCCTGGTTGCCTTGCCTGCCACCATACACTAGCATGACCCTTTCAATCTCTGGACCACTCTGAAATCACAACAGATTTGCCAACGGCTACAAACCCCTATTGAATCCCGAGTCCACAACCTCTTAAAGGCGTCCTCATGCTTCCCAGCCAAAAGAGTTCaggaagagtttgtgcatatattatgacattttgtCATGTCTTTTGTTCGTTTCGGGCACACAATGTTTTCTGAAGGCAAACAGAAGTAGGTAGCCGAAGTTTACGCAACTTCcgttggtgattggtcaacagagGGGTCCTTCAATAATGTCTTTGTTGTCATTGAATGAGAGATGACAGTTTCATcaattttacatttttgtttttattgCCAAACTccgttagatgtaaaattgtgcgACAAAGATCTCCTCTGCAAAAGCATCAAAACGAATGACAGATTTCTTTGATTAACTGGGACTATTTTGTGGAAGTGTATATTGGCTACAGCCTCTTGAAATGCACAAACAGTCCTGTTGCTGCTGCTTTTTCTAGTTCTCCAAATTAAGGTCTTaagggactatgcatataatctctcctctctcacagcaCCCCTCCGCTCCATCATGAcaactccctccatcccctctcctcaaAAAATACACTATGattaatgataacttggctatatacacagggtaccagtgcaggggtatgaggtaatgtaGGTAGATATGATATGGTAGATATTTGgtaaactatttaactaactatttagcagtcttctgacttgggtagaagctgttcagtgtcctgttggttccagacttgctacgttggtactgcttgccgtgtggtagcagagagaacagtctatgaccttggttggctggagtctttgaacattTCTAGGGCCTTCTGTCTGACACcaactggtatagaggtcttggatggaaGGGAGCgcgaccccagtgatgtactgggccatacgcaaaaccctctgtagcgccttgcgatcAGATgctaagcagttgccataccaagctgtTATGCAGCCAAGATGCTctgtggtgcagctgtagaacttttgcgGATCTGCATGACCATGCCACATTTTTTTTCAACCTCCTGAAGGGGACATGGCATTGTCTTCtgtcttcacgactgtgttggtgtgtttggaccatgatagattctTAGTGATGTGGACCCCGAGAAACGTAATGctcccgctccactacagccccgtcaatgtgatGGTGTGCTCGGCTCTCCGTTTCCTGCTGTCCATGATcacctcctttgttttgctgacgttgagggagaggttttgtGTGTTAGCACCACAATGCCAGGTCtcctacctcctccctataggctgtcataTCGTCATTGTTttggcctaccaccgtcgtgctgtcggcaaacttaatgatggagtCGTGCGCAGACAAGTAGTCATGGGTGTACTCCCAGTTCACCCATGACTACAAGGGGACTaagcactcacccctgaggggccctccTTGTTGAGGGTCAACGTGgtgaatgtgttgttgcctacccttaccaccggGGGAATTGCTTCTGtaattccaggatccagttgcagagggatgtgttcagtcccagggaccttagcttagtgatgagcttggagggcactatggtgttgaacactgagctgtagtcaatgaacagcattctcacgtaggtgttccttttgtccaagtagGAAAGGGCactgttgagtgcaatagagcatgtgtcatctgtggatctgttgtagCTGTTTTCATGGCTACAAATGTGAGTGCTACTGAGCAGTAGTCATTTAAACAGGTTACAtatgtgttcttgggcacagggactatggtggtctgcttgatgcatgtaggtattacaaactgggtcagggagagattgACAATGTCAGTGAACACACTTGGAGGGGATAGGATAAAAGGAGAGTGAAGATGGCTGGAGAGGATGGCAGggcagtgagggagaggaggctggATGATGAGAATAGAGAAGGGCTATGACAGGAGGATAGTATCTCTGTGGTGAGGTGTCAGTGCTCCTGTGTATAGCGCCCGGGGTTGAGCTGTTTAATCAGCAGGGTGGCTTTGCCAAACCACAGCCCTCACTGCTGCCATTGTTCACGGCTCAGCCCTAATCTGATCTTCTCAAGTGTCGTATCCCCCCCCCTCCTCAATACAATAattgagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagggaggggaagttAGAGTTTAAGTAGCCGCCAGAGCAGAAGAGTGACGCTCACTCTTAGATGATCTCAAATTATTTGAAGCATCTCTTGCTGTGTGTATTTCTGTTCTTTCCGCTCGGTCTTGGTGGGTACCAGCGTGATATGAGGTTTCTTATAGGTTCATATCTCTAACAAAGGAAAGGAAGAGCGTCGGGTGGCACTGGTAATGTGCTGATAATCACTGTCCTCGTCCTGTTACTTTTCACTCCTCAACCCTCCCAGAGGGAGCATTTTAATGTATCTGGTGGAATAACTTAAGCCCCACACCTAACCTGAACCTTGATACAACTGAGCCATCTACAGTACACTACTGCTCTGAGAAGTCTTTTGATCAGCTATAACCCATGGCCAGGGCCTAGTATGACTGTTTTATAAGGACTTTTCCTGGTCAGGTAAGTGTTATGGGGACAACTTTCTCAGTTCCTGCATTTGAAAAAACTATACAAAGATCAGCTTTATTGCAGATTGtagcttctatcaatgtaattgtctgcgtcatttccaatcccccatattgtttttggtaaatatatattttcctttatattcccctaattggagtaaactaatggacaacagaagttaggcttctacttccaggttatacattttatggacacagtatattttacttattttttaaaactaatttgtcccacccttcagctcccctcaacccctcccatctatctctgaacgcCATCCAGTTTCTATTATCCATAATAAAGAGATCACTTTTTTGACTTTACACCCCTGTGGACTCTAGTTTTATCTTaccttgattattgtccagtcatatggtcaagtgctgcaaagaaagacctaatTAAGCTGCAGCTGTTCCAGGACAAAGTGGCTcgtcattgtaatcagagggctgatattaaTACTATTCATACCAGTATCTCTTGGCTAAAAGTTGAAGAAAGACAGTCACTTGTTTTTATAAAAAATGTGTTgtggaaattccaaattgtttgcatagcacacacttaccccaccagacatgccatcaggggtcttttcacagtccctggatccagaacaaattcaaggaaacgtacagtacagtattatacagagccatgagtgcatgaaATTACCTACCATCTTATAttgcactagtgaacagcaaacctggtttccaAAAACAAATTAAGCACCACAAGGCACAACGCTtctccccatgtgacctacttgttgtgtgtaaaGTATGTACTGACATGCATGTGGTAGaagcgcgcgcgcgcgcgcgcacacacacacacacacacacaacatatgttaatgtttttaaatgtatttcaattgtaaaaaaaaaacatatatttcttTGTCTGGACCCCAGTAAGCCTAGCTGTCACCATTGGCGTCggttaatggggatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1683366 lncRNA upstream 9940 61144676 ~ 61144955 (+) True G1471858
TU1683363 lncRNA upstream 11136 61143442 ~ 61143759 (+) True G1471855
TU1683362 lncRNA upstream 13711 61140774 ~ 61141184 (+) True G1471854
TU1683361 lncRNA upstream 17306 61137219 ~ 61137589 (+) True G1471853
TU1683226 lncRNA upstream 19324 61133178 ~ 61135571 (+) True G1471720
TU1683371 lncRNA downstream 7520 61167024 ~ 61168190 (+) True G1471863
TU1683376 lncRNA downstream 19145 61178649 ~ 61178965 (+) True G1471868
TU1683421 lncRNA downstream 89127 61248631 ~ 61249839 (+) True G1471911
TU1683425 lncRNA downstream 100589 61260093 ~ 61260559 (+) True G1471915
TU1683426 lncRNA downstream 101147 61260651 ~ 61260857 (+) True G1471916
XM_036950363.1 mRNA upstream 25528 61054631 ~ 61129367 (+) False LOC110494279
XM_036950364.1 mRNA upstream 25528 61054631 ~ 61129367 (+) True LOC110494279
XM_036950365.1 mRNA upstream 25529 61054631 ~ 61129366 (+) False LOC110494279
XM_021569221.2 mRNA upstream 111173 61039278 ~ 61043722 (+) False LOC110494276
XM_036950362.1 mRNA upstream 117293 61028430 ~ 61037602 (+) True LOC110494275
XM_021569226.2 mRNA downstream 110981 61270485 ~ 61276247 (+) True LOC110494282
XM_036950368.1 mRNA downstream 193981 61353485 ~ 61458471 (+) False LOC110493231
XM_036950369.1 mRNA downstream 193981 61353485 ~ 61458471 (+) False LOC110493231
XM_036950370.1 mRNA downstream 193981 61353485 ~ 61458471 (+) False LOC110493231
XM_036950371.1 mRNA downstream 193981 61353485 ~ 61458471 (+) False LOC110493231
TU1683229 other upstream 155832 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 1050888 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 2647010 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 3540595 57589865 ~ 57614300 (+) True G1467219
TU1678194 other upstream 3606717 57498382 ~ 57548178 (+) False LOC110494206
TU1684022 other downstream 396815 61556319 ~ 61557038 (+) True LOC110494283
TU1684810 other downstream 1538999 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 1550835 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 2057444 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 2498940 63658444 ~ 63663254 (+) True srsf3b

Expression Profile