RNA id: TU1684174


Basic Information

Item Value
RNA id TU1684174
length 2607
lncRNA type sense_over
GC content 0.42
exon number 7
gene id LOC110494287
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61708686 ~ 61714434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTTCACCCAGCACGGTCACTGAGCTGgcaagctaaagttagctagtgaGTCACAGAAATGTACGTTCAGTCTGTTAATTATTTCAGTCCGATTGGACTTATCCTACTCAAATCAACATGGCTCAACATAGTTTTTCGTTTTTGACCTCGACATTCTTGCTGGATAGATACTGTGATAGCTAACATGTGGGCTAATCTCCTGTGGATGCCTCCCTCTAGTTCCCTAGAGCAGCAGACCGGCCCTCCATTCCCAAACCTGAAGCCCCCTGTCCCCAGCAGGAAATACCAAGAAAAACTTCCTATTGAGGAAATCTAATCACTGAATGTCCTACTACAAGGATGTGGTCAGGTTGACACACTTATGAGCCACAATAACACAgatcacacacaccacagattGCGAGGATCTGTCAACTAGGCTCGGTGGGTGTTTCCACAAAGATGTTCCAGACCTGGAGTGGCACGCTGGAACTTCCAGAGGCTTGTAGACCTGAAGCAGTGTGAGATCTGACACCCCTACTAGCTCAACCACAGTTCTCACAGCTGCAGTCGTCTGCTCCTGCACCTGCTACACCGGCCACGACAGGTGATTCAGATCTGCCACCCCCAGCAGTCCAGCAGTCCTCTGCTGTGGTATTTAATTTACCGGCTACACCGGTTCCTACTACACTGGCCGTGAAGGGAGAATCTTTTGAGGATTCCCAGATGGATACAGATCTGCCATGCACTCCACCACTACCCCAGACAGCCTCACCCAGAAGTGCATGCACCGGGCCTATCACAAAGCAGAGATGGGTGGCTGACaaggaaaaataaaatacaacatgcacacacactctctctgttaCACACACATTATCCCCAATGTaaataaattgtaattattttattttaggaTTGGAGATATCTTACGCCTACATATTCATTATCAATAGCTACACAATTACTCTATCCAATCAAAGTGTGATTGATAATATTGTAAGATTATTGCTTAATTTGTAGTTTGAGGAAATTCTGTGTGCTTTTTTTCTGAGTTGAAAAacatgcctccctctctctctcactcacacacacccaatgtaaatacattgtttattttATGTATGCTCTATTTTATTTGAGGATTGTGTGCAATAAAGTACATTCACAGTTAAAGCAACAGTTtggtttattggatatttctctgattaaaataaataaatgaccaAAAGGAAGTTGGCAGACCTACAACCAACCCCCTGGGAGTGTGTGTAGGTTTTGTCATCTGGAGCTGACacggccccaacagccctcacataTGTACAGGGTTCCCATGAGTGGCAGGCAAATATGTTTGTTTTGCAAAATACGTTTTTATGTACCAAGGCCATTCCCTGGCTACCCACCCAAATCGCTCAGGCTAAACTGACTTTTGTTCTCCACAATGAATGTATGTAAAACTCAGGATGAGATATCAGGCAACCAAGGCCAAGGAATGGCGAAAGAGATGACCTGGAGGGAGTTCCAGACCTCAGCTTTTTATGAAGCAGAAAACCACAGATGGTTGGCTAACAACaaaaaatgacacacacacacgtaaacacattGTAATTACTTGTTTATTTTATATGTATGCTCCATTTTATTTTAGGTTTGGAGATATTTAGGGCTACAGATTGTTATCCATTTCCCACAACAGACATATGCAGTTGTGCTTACTCAGTTGGTGGAGAGGTCATGGTTAGGAGAAATGGTGGCTGACAAGGAAAAATAATAGAGTGACCAATAGTTACTGTATTGTGATAGTTTAGTGTTTTAATTACTCAACAAGTAGCGCCCCAAGATGGGATCCAACTGTGTCTCAAAAGCAGTATAAAAGGTCAAATAAGGTCACCAGAATTTCTGTTACAAGTCTGGCTCCCACGAATCAGGTGCAGGTGCTTACGCCAATCCACCTTCCCtatccacaatgccctagcaaaacCAAAACATACTAGAATGTAACAGCTCTctctgttgcccctagtggccattTTACACGTCATTTCCCGACATCCTCAAACATGGATGCACGTCTAACCTGGCTGATTATGTCACCACTCTGAACAAACAATGCTTTTTAAAAAAGTAGACAGTGCAGGTGTGCCATGTATTTGTGCATATTTTTGCATTTACGTTCAAATGTCTGCAGAAGTTAAAGTGTTGCCCCTTTCTTCTCTTGTGAGGCATGTCCCAACATATACATGGTAATACAACGGTCAACAAACATGCCTGTCAATACAATGTTCAGTTCAATTAGCTGTAGCATGATATCAATATATTGCACAATACTACATACTCACCCAGATACATCTTGATATTAGGAAACTACAAGCCGTTAAAACAAATGGGTCATTCTCTGACTAAAATATCCTGTCACATTTGAACATAACAAGTCATTCCAAGAAATCATCACACAACTGTTTGTGTTATTTGGTGTTTGTACCTACTCCACATTTCACAACTACATACGCATTTCCACATTTCACATATTCCTATTTCGCAACTGTTTGAGCCACAATATTACATTACAGACCCATTCTGCCTCCTGCTGGATATATTTAGTACTATTTGACAGCATGATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684186 lncRNA upstream 5699 61703608 ~ 61704013 (+) True G1472611
TU1684090 lncRNA upstream 111167 61598318 ~ 61598545 (+) True G1472519
TU1684086 lncRNA upstream 115428 61594075 ~ 61594284 (+) True G1472515
TU1684083 lncRNA upstream 121576 61587867 ~ 61588136 (+) True G1472512
TU1684081 lncRNA upstream 124743 61584198 ~ 61584969 (+) True G1472510
TU1684242 lncRNA downstream 98147 61812581 ~ 61813586 (+) False LOC110494291
TU1684244 lncRNA downstream 98147 61812581 ~ 61813586 (+) True LOC110494291
TU1684288 lncRNA downstream 145913 61860347 ~ 61865508 (+) True G1472696
TU1684208 lncRNA downstream 153211 61867645 ~ 61898508 (+) False G1472625
TU1684203 lncRNA downstream 153249 61867683 ~ 61872762 (+) False G1472625
XM_021569229.2 mRNA upstream 24795 61676965 ~ 61684917 (+) True LOC110494284
trnaf-gaa-81 mRNA upstream 121249 61588391 ~ 61588463 (+) True trnaf-gaa-81
XM_036948426.1 mRNA upstream 127843 61579639 ~ 61581869 (+) True LOC110495182
XM_021569227.2 mRNA upstream 151384 61555873 ~ 61558328 (+) False LOC110494283
XM_036950372.1 mRNA upstream 251241 61353485 ~ 61458471 (+) False LOC110493231
NM_001124302.1 mRNA downstream 9368 61723802 ~ 61727917 (+) True LOC100135961
XM_021569232.2 mRNA downstream 15703 61730137 ~ 61734631 (+) False LOC110494288
XM_021569234.2 mRNA downstream 15703 61730137 ~ 61734872 (+) True LOC110494288
XR_002469396.2 mRNA downstream 30518 61744952 ~ 61746038 (+) True LOC110495184
XM_036950375.1 mRNA downstream 34277 61748711 ~ 61764097 (+) False si:dkey-197j19.5
TU1684022 other upstream 152674 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 710649 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 1605705 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 3201827 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 4095412 57589865 ~ 57614300 (+) True G1467219
TU1684810 other downstream 984069 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 995905 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 1502514 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 1944010 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 1969656 63684090 ~ 63688090 (+) True tmcc2

Expression Profile