RNA id: XM_036950374.1


Basic Information

Item Value
RNA id XM_036950374.1
length 4301
RNA type mRNA
GC content 0.52
exon number 8
gene id si:dkey-197j19.5
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61748711 ~ 61764097 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTTGACTCCAACAACAGGAGTCGGGGTCGACTCCAAAAATCCCGGAGTCCATTACTTTGACCCCCACCCGTTTCCATGGCAATTCCATTGTTGGTCGAGTTCAACTGACATCTTTACCGCATCTACAGTATGGAGTGGCCCCTGCGAAAGCAACAAACGGTTCCATGGTTACCATGCGTAAACACGCACGAGTGGATCAAGAACCAGCGCTACTCCCCAAGAGTAGACCGCCATGACAAGTCGAATGCTGAAAACAGAACTGGTGTCGCTACTTCTCAATTTACAATAGGAATACATTATATACAATATAAATCCAAAACTGTTTCATTTGACTAGGTCTATAATCGTAGCACCCAAAAATGGATGATTTGGAGATAGAGGAACAACTGGCGCGGATTAAAAAGAGAGATTTATTGCAGACATATTTCTACAAAATGGCAAGCAGAGTGTTCGGTCCCGCTAAAACACGGGACAGGGTTTTCATCGCGCCACCGATGCCCAAACGGCCCGTTTGCACGTCTAAGCCTGAAAGCCAAGTGCTGACAAAATGCCGATATGGGTCAGTGGCGGCCATTGTGCCAGGAACAGGGGACAGAGTCAGTGGTGCTCCAATTACAGTGATGCCTTTGGAAGTTAATGACACGAAGCACCAAGACTGGGTTAACCAAAGGAGGTCTTTTCGTCGACAGTTTGATAGTCTCGGAGACTTGTCGAAGTGGGTTAACAGCAAGCCGACGGTGACCGAGCTGGAGATGTTGGTtgtggaaagagagaaaaagaagcaGAGAACTCCCTCACCTGTCCTGGGTTTTACTTTGACACCCCCTGAGGCTCTTAAGGCCAGAACACGTGCCAGCCCGACCCGTCCTTCTCGGCGGGCTAATGTGCCTCGCACACACGCAGCCCGGTCCCAACTGCGCGAGGtaaaggaggtaaggaggtacCTCCGCACTCACAAGCTCCGACCCTCTGAACTGGCTAAGAGGCTTGACAAACATGGCACGGGACGCATCAGTCGGAATGACCTCCGAGCTGTGTTTGAGAAGGAGGGCCTCCCTGTGGTGCCAGAGCATCTGGATGATCTGGTGTCCACTCTTAGCGGCATGGAAggggacacagtgacagtgaagGACTTGGCGGAGGGCATCAAGGCCTGGAGcctagagagggagaaggaggagagtacCAGCTGGGGCCGCAGGggcctgacagagagaggagagctagagCTGGAGAAAGGATGCAacagggaaatagagagagtgaggtgCAGGGAGCAGCGGTCTCCGAGCATCCTAGcaCGGAGGCCAGTGTGGAGCCGTGGTCTTAAGCGTGGGTCGGGGAGGCATGGTGCCCAGCTCCTGCCCCTCCCCAGTCCTGAGCTGTGCCTGCAGACTCCCCTGTCTCTAGAGGAGCAGCAGGAGCAGGCCCTTATCCAGCAGCACCGCCGCAACAGGAACAAGGAGGGAATGCAGGATGAGGAGGTGCTGGCCATCATGAGGACAGTGTGTACAGGGAACACCACCCAGGACGCCCactcccacccctcctctctgggAGGAGACACGGCCCGAGTGTTGGACAAGTTCAGGAGACAGTGTCTGGGGGAGTACCTGGACTCACTGGACCAGTGTCACACACAGGGGGTCGCAGTCAACCAGGCCACACTGGAGAGAGTTCTGCTGCATCCAGGGGACCATGTCCTAAAGGGTCCAGAGAGTCTCTTGCTGAGGCAGGCAGGAACCAATCCCATGCCGGGGTGTGGGGGCCGTCTGAGGACCTGGATCGGTTACAGCAGCAGTACCCCGCGGGGGGgcgaggagaaggaggaagaggagcatgGCCTGGAGGAAGAGGCCGCTCTACACAAAGTCTGCAAGGATACGTCTGTACGTCGGGGACCCAAGATGATGACCCTGTCCACAGGTCGAGCTGAGGTAGGACACAAGACAGAGTGCAGGCTGACCAGGGAGGAGTATACCCACATGACCAGtgtgtatgttcTGTTTGTTTGGAGCAGCAACATGAGGGAGCCGTCCAGCCGTAGAGCCGACCCTAACGCGTTCTGGACTGGTCAGGACAACCATGTGAGACTCTACCTGCCCAGAGTGGGCCTGTCTCCTGAGGGGGTCCTCTTTGAACACATCATCCGCTCTCCCGCCCCAAGCCCCGGCAGCTGGCCTGTCAACGACAGGGGCTACTTCACCTCTGGAGACATAGATGGACACAAGGCCTACACCCTGTAGAGCACTTTACGCCATGCTCCAGATACAATATTGTACTTTCATGTGGGAGTTCAAAGACTTTTTGCTGTTAGATTATGGTTACAGTCTTATCCAAGGGTCTCCTCTTCATTTCACAAGGCTATTTTTAATTGAGATTATTTTGTCTTTGAAGCTAATAAAGACTATAATATAAAGTGAATGTCCAGTCAGAGGAGTATCCTTTTAGGTGAGTAGTTTTAATGACGATCTCTCAAGACTGTCCCGAAGAAAACCCACATACTGCTTTATGGCATACAGTCACATTGTCGTGCACACTATGACATCTCCccttttaaagggatacttcaagGTAGTTTTGTGAGCCACTGATAACTAGCGTTAGTTTTTTTGGGGTtgtgtccctctctctaccttctttctctctcttctattttATTTTCAACGGACTAGGGTACAGTGCTAGTAACAGTGGCTTGACCGCAATTGGTGCTGTTGCCCTAGTTCACGGACCCCTCTGACACCCGAAGGACTAGGGAAGAAGGAAAGGTAAAAGTGGCTTGACCGCAGCCCAACCTGACTCCCCAGTCCACAGACCACCCTGACACCTGAAAGATTGGGGGCGAAGGAAAAGTAACAGGGGCTTGACCGCGGCCTGACCTGACTACCCAGTTGACGGACTACCCCAGACCCCCCATGCATCCAGAACTAGCATCAGACCAGCTGTCTGAGGAGGAGACGACGGACTGCAGGCCTCGAGGCGAGTAAAAGCGCTGCCATGGCTAGCCTTTACTCCCTCTACCCCCTGGCCTGCAGCCCTCCTCCCCTGCTTATTTTTTTCCATCTGCCCTCCTCAGGCCACCACCATCCAGACTAGGACCAGCCGACCGCCAACCATCTGGAGCAGTTTTACTAGGAGACCCCAGACCAGATGCAGAAAACACCACGACAACCAGGGCGTGGAGGAAGGAACCCCTTTAAAGATACCAACCTACGCCTGGAGCGAGTAGACTACAGGGGAGTGCCTCCATTGACCTTCGGGTCACAGACTTCCAGGTGTGTCTACTCGCTTTAAGATTGTCCTTCCTCACCTTGCAGGACCAGAGTAGACCAATGACCAGAACAGACATCATCAAGACCAGAACCAAGTTCCGTTAAGACCAGACCCAACAGCAGTGGACGGAGTCCAACACCTCTCCAGTACCATCACGCTGGGGAATAACAGGGGCTCCGTCAACTACTATGGCATGCCCAAACTGCAGGAAATGTGGCCAACTGGGCCATCTAGCTGTAGCCTGCACAGCCATCATCTGCAGAATCTTTAAAGGGATACCATCCCACCTCCACACGACCCTGCAACCTGTGCGGGAAAGGGGGCTATTTCTTCAGCACCTGCCACAGTTCCTATGCTGGGAAGGCAAGGGCCAACGGCACCAACCCCAAACCCACTAAGCCACTGCCCCTGACCCCCTTACTGCCCCTGTCTCCTCCAGCCTGCTCCTTAGTGACCGAGCATCCAGACTTGCTGCCGCATCGCTCCTCCTCCAGCACCAGCCCAGGCCGATGGACATACTACCCCCACAATAACCATTGCACAAGGTAGCTACTCTACCTGCTTCATTCATGACGATATAACCATCTGGAAAAAGCTAGATTGCTAGTCAAGTTGCTAGTTAGCTAAGTTAACTTATATTAACCAGTACTACAAAATACAGCTAAGCTTTTAAAATGTTAGCTGTTACCTTCAGGCTTGATAGTTGgttaaaaagaaaaacccttgaagggaAGGCGATTTTCGTTAtttgttagctagatagctaggcTAACTTACCAGTTAGCTTTTATCCCCCTAtcaaatctagctagctagctagccccaCTGGCTGCTGGCCAAATAAGCTAACGTTCTTGATTCTAGTTACCAAGATAAATAAAACATCTACAATTAGCTACCAACAGAGtttatctatattattcgtaCCCGTCTTTTTACCATGACAAACAGATGCTGAcattaagaccgcactcaacaagctgtataaagccataagcaaacaagaaaatgcttatccagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684174 lncRNA upstream 34282 61709712 ~ 61714434 (+) True LOC110494287
TU1684186 lncRNA upstream 44703 61703608 ~ 61704013 (+) True G1472611
TU1684090 lncRNA upstream 150171 61598318 ~ 61598545 (+) True G1472519
TU1684086 lncRNA upstream 154432 61594075 ~ 61594284 (+) True G1472515
TU1684083 lncRNA upstream 160580 61587867 ~ 61588136 (+) True G1472512
TU1684242 lncRNA downstream 48486 61812581 ~ 61813586 (+) False LOC110494291
TU1684244 lncRNA downstream 48486 61812581 ~ 61813586 (+) True LOC110494291
TU1684288 lncRNA downstream 96252 61860347 ~ 61865508 (+) True G1472696
TU1684208 lncRNA downstream 103550 61867645 ~ 61898508 (+) False G1472625
TU1684203 lncRNA downstream 103588 61867683 ~ 61872762 (+) False G1472625
XR_002469396.2 mRNA upstream 2678 61744952 ~ 61746038 (+) True LOC110495184
XM_021569234.2 mRNA upstream 13844 61730137 ~ 61734872 (+) True LOC110494288
XM_021569232.2 mRNA upstream 14085 61730137 ~ 61734631 (+) False LOC110494288
NM_001124302.1 mRNA upstream 20799 61723802 ~ 61727917 (+) True LOC100135961
XR_002469244.2 mRNA upstream 35736 61709688 ~ 61712980 (+) False LOC110494287
XM_021569236.2 mRNA downstream 30949 61795044 ~ 61804070 (+) False LOC110494290
XM_036950376.1 mRNA downstream 30949 61795044 ~ 61804070 (+) True LOC110494290
XR_005037041.1 mRNA downstream 45837 61809932 ~ 61813649 (+) False LOC110494291
XR_005037042.1 mRNA downstream 45837 61809932 ~ 61813649 (+) False LOC110494291
XR_005037040.1 mRNA downstream 45837 61809932 ~ 61813656 (+) False LOC110494291
TU1684022 other upstream 191678 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 749653 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 1644709 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 3240831 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 4134416 57589865 ~ 57614300 (+) True G1467219
TU1684810 other downstream 934408 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 946244 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 1452853 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 1894349 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 1919995 63684090 ~ 63688090 (+) True tmcc2

Expression Profile