RNA id: TU1684244


Basic Information

Item Value
RNA id TU1684244
length 702
lncRNA type sense_over
GC content 0.47
exon number 3
gene id LOC110494291
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 61809932 ~ 61813656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaCATTTACAATATAATTAGTTCTCTCAGCTTCAGGCAGGCcagtcctcttctctttctcccctcgtCTCCTCTTCCCCGATCTCGCTGTCTCACttgctgtctctcttcctctccctctctttctcaaacaGAGCTAGTGGGCAGACTCAGCTGCACCGTACTGACAGTGTGGACTCTGCCTCAGGCTGTTTGTGTGAACAGGAACAGAGCAGATCTGGGATCAGCACTCCATATCCAGATGTGTCAGAACGAGAAATATATAGGCCAACATCAGCACACTGGAGCTCAGACAGACCCAGATAATTCACTATTAGATACATTTTATGATGCTGCATTAGAATGGAAGAAAATATAAATGGCTGTCTGACTGATTTAATCTTGTCTCTTCTCCAGACAGTAGTCCCAGGTGGGAGTGGGCCCAGAGCAAGGCCTCAGTTCTAGTGAGCTGGACCCTGCTCTGAGGAAGCTGCTCAGGAAGGCGGGGCTAAACGAGGAGGATATGAAGGACAGACACACCCTCCTCCTAGAGGGGCACACCCTGAGATGATCAGAAAGAGCTTTCGATCATCTGTGACGCAGTggtgacctgtcattcagggcagagccccacctgttaaGCTTTTTGTTGCCTGTTtttcatgttattttggcattaatacatgtcacacaTGTTTGCAAACAATGTCAAATAATCATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1684169 lncRNA upstream 57024 61692929 ~ 61755557 (+) True G1472595
TU1684174 lncRNA upstream 98147 61709712 ~ 61714434 (+) True LOC110494287
TU1684186 lncRNA upstream 108568 61703608 ~ 61704013 (+) True G1472611
TU1684090 lncRNA upstream 214036 61598318 ~ 61598545 (+) True G1472519
TU1684086 lncRNA upstream 218297 61594075 ~ 61594284 (+) True G1472515
TU1684288 lncRNA downstream 46761 61860347 ~ 61865508 (+) True G1472696
TU1684208 lncRNA downstream 54059 61867645 ~ 61898508 (+) False G1472625
TU1684203 lncRNA downstream 54097 61867683 ~ 61872762 (+) False G1472625
TU1684207 lncRNA downstream 54097 61867683 ~ 61898508 (+) False G1472625
TU1684204 lncRNA downstream 56985 61870571 ~ 61872762 (+) True G1472625
XM_021569236.2 mRNA upstream 8511 61795044 ~ 61804070 (+) False LOC110494290
XM_036950376.1 mRNA upstream 8511 61795044 ~ 61804070 (+) True LOC110494290
XM_036950375.1 mRNA upstream 48484 61748711 ~ 61764097 (+) False si:dkey-197j19.5
XM_021569238.2 mRNA downstream 2904 61816490 ~ 61851025 (+) False LOC110494292
XM_021569237.2 mRNA downstream 25218 61838804 ~ 61851025 (+) False LOC110494292
XM_036950377.1 mRNA downstream 29366 61842952 ~ 61851025 (+) True LOC110494292
XM_036950380.1 mRNA downstream 74006 61887592 ~ 61894193 (+) False si:ch211-157b11.8
XM_036950381.1 mRNA downstream 74006 61887592 ~ 61894193 (+) True si:ch211-157b11.8
TU1684022 other upstream 255543 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 813518 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 1708574 60101892 ~ 60104007 (+) False G1470607
TU1680364 other upstream 3304696 58507297 ~ 58507885 (+) True G1469076
TU1678198 other upstream 4198281 57589865 ~ 57614300 (+) True G1467219
TU1684810 other downstream 884917 62698503 ~ 62698815 (+) True G1473171
TU1684816 other downstream 896753 62710339 ~ 62711136 (+) True G1473177
TU1685904 other downstream 1403362 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 1844858 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 1870504 63684090 ~ 63688090 (+) True tmcc2

Expression Profile