RNA id: XM_036950405.1


Basic Information

Item Value
RNA id XM_036950405.1
length 3042
RNA type mRNA
GC content 0.48
exon number 5
gene id c1galt1b
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 62763482 ~ 62774441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAATACAGCCACCGTAAAGAAGCGTTTTACACCTCAATAAAATCATACTGCTTTTACATCGAAGTTGAGCCTGTGGCTAAGGTAGTTTATTTTGACATAATATGAAAGACACCGGATACTCTTAGAGAATCAGTATTGGTTTCGGATGACAGTTGGAATTGATGTCTCGTTTCGCTATTTGTAATCCATAGTTGGCTGGCTGATAAGGATGATGTGAGATGCGGCTAGCTACCAAACCCACAGAGCTAGCTAGTCGTAAGCAGATGGCTCTCTAACATGACACGCGCCACAGTTTCCCCACTTTTCAACTGGACCCAAGAGAGGGACTTTTCCGCAATGGTGTTCAAGTAACGGACACAGCTTGAGGCACATTGTTTGAGTTCGTCATGAAGGCGCTGGGCTCGCGCTTTGCCTTCCTCATAGGCTTCCTGGTGGGGACCTGTACGCTCTATGTGTTCCTACGTCAGGTGTGGTTCGAGAGGACCTTCTCAACACGTTCTCAGCCCGATGGCCTGGAGAAGACAGCGGCTCAGCTACGTGAGCTGGAGGAGGACAGCAAGAACTGGAAGAAGGAGAGGTCGGCTCTCTTCAACCTCAACCACCCCCACCACAAAGGTGAGGACAGCCACATGGCAGACGAGCTGTACAAGAAGGTGCGCATCCTTTGCTGGGTGATGACAGGGCCCAACAACCTGCAGAAGAAGGCCCGCCACGTAAAGAACACCTGGAGCCGCCACTGTAACGTGGTGGTGTTCATGAGCTCTGTGGACGACCCTGACTTCCCCACTGTGGGGCTGGGCACCAAGGAAGGCCGCGACCAGCTCTACTGGAAGACCATCCGGGCCTTCCACTACGCCctggagaaccatggagacgagGCCGACTGGTTCCTTAAGGCTGACGACGACACCTATGTTGTCGTGGACAACCTGCGCTGGGTGCTGGCCAACCACACGCCAGAGGAGCCCATCTACTTTGGACGCAGGTTTAAGCCCTACACCAAGCAGGGCTACATGAGCGGCGGGGCAGGCTACGTGCTGAGCAAAGAGGCCCTTAAGAGGTTCGTGGATGGCTTTAAGACCAAGGTGTGCACCCACACCACCCACGTGGAGGATCTGGCCATGGGCCAGTGCATGGAGAAGGTGGGGGTGGTGGCCGGGGACGCAAGAGACACCGTCCTCAGGGAGACCTTCCACCCCTTTGTCCCTGAGCAGCACCTCACCTCCAAGTTCCCCAAGAGCTTCTGGTACTGGAGCTACTGCTACTACCCCATCTCAGAGGGGCCAAATTGCTGCTCGGACCTGTCTGTGTCTTTCCACTATGTGGACGCGTCTCTCATGTACCTGTTGGAGTACTACGCCTACCACCTACGTGCCTTTGGCTACAGGTACCGCTACCAGCCCCCGGCCCCCCTGGGCTACAAGAATGAGGCGTGGGACAGGTCAGAGGGTGGACACTCGTACTCCAAAGAGCAGCCGGCCATCCAGAGGGGGCCACTGGCGAGGGTGGAGAGTCCGTCCAGgacagacaggaaacaggaagtgatgcCTCCTGCTGCAGCAGAGAAGGACCAGCCTGCTGCTGCACAGGATGACAAGCAGTAGCAGCCTTGTGTATCTGAGAGCGAGGTGTGTTAATGGTTGCTTTTGAGCGTGCATGTGTGCATATGCATCTGAATGGACGCACTTGCACACATTTTTACAGAAGTGAAAAGATTCAACTGTGGTGCCTCCCAAAGAAGTGTGCTGTTGTGAAGGATTGTGTCAGTGTTGAAGAATGTGTGACTGGCTGTTGGTTGGGTTGTTACTGGCACCAACcatcccctttttttttttttctttttgtcCTTACCACACAGCCTCCATGTTGAAATGTCAACAGCCCTTCAATTTTTTAAGATATTTAACATGATTGTTGTTTTAAATACCTGTTTTAATTCCTTCAGTTCTTGGACCACTCTTAAGGCATCATCAAATAATTAAAGGATGACTTGGTGAGTGGTCCTGGGCCAATGTTCCTATAGGATATTCCTACCTACTGGACTGGTTCATCTTGCTACTCCCCACTGTAACCAGTTTGACCAGTCCTCACAGCCCCCGCTTTAACGTTGAGCTGACTAGATTTATCAGAAAGGatttaggatcagcttcccctaccCTAATCAACCTACGCTACTAGGAGTTGAAAACCAAACTGGTCTTAgatttgtgtttttatttatacCTGTATAAAATATTGTCTGTATAAGAAGACCAGGTCTTTCAGACATACTGTTGAAGAGTggtcacgagagagagagagggtcacttTAAACCTGggagactctctctctcaatcagcCCCAGTAGCTTGTGCCTTGTGAAGCATGATTGTGTGCAACGTCAGTTGCAcattttgaaactgcactgtgaCTAAAAACAAGACGGACATGTCGCTTGAACCTACCTGTGCATGTTCAGTTAGCCGATCTCTAGAGAACAGTTTTTGCACCCTGTTTGATTGGATAAtattgtgtttatttgtttgattCAAGTTCTATTTAAATCTGTTATGGATAGGATGATTCAATAGTTTTTAGGGGAGAGTTTTCTGGGAAATGACAATGGGTGGGGATGTTtggtgtgtgtgatgtcattagctGATGTCGCTGACTGATTTTGTTTTAATTTTTATGAGTCTTCATTGTATTATACCATATTCTTATTCTGTATGCTtttccagtatattatacttttTGAGCAAAGTGACTCATTGATCACCTCAAACCAAACTCACAGGGTGTCTTGTCTTTTCATCTTCAGTTCAAATGGGACTTATGTCTATAGCCCTGTATTTCACTGGTTGATGTCTGTTTTATAGACATGTGTTAACTTAACATCCTGTACGTGGTGCTGTATATTGGTCAGACACCATTTTCACAAACAGAGGGCCTGTATAGGTAGGTGTATTGACATTTGTCACATGGCAGCCTCCATTGTAACTTAAACAGTAAACCAAATCAGCATGTATGCTGTTAGATTTTATTCTGTATTTTAAACCCG

Function

GO: NA

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685644 lncRNA upstream 797 62762809 ~ 62763078 (+) True G1473921
TU1685642 lncRNA upstream 1652 62761783 ~ 62762223 (+) True G1473920
TU1685620 lncRNA upstream 7405 62756010 ~ 62756470 (+) True G1473901
TU1685618 lncRNA upstream 8898 62754754 ~ 62754977 (+) True LOC110493236
TU1685604 lncRNA upstream 19312 62744257 ~ 62744563 (+) True G1473885
TU1685646 lncRNA downstream 298 62774739 ~ 62777246 (+) True G1473923
TU1685647 lncRNA downstream 3455 62777896 ~ 62778280 (+) True G1473924
TU1685651 lncRNA downstream 4411 62778852 ~ 62779087 (+) True G1473928
TU1685652 lncRNA downstream 4687 62779128 ~ 62779440 (+) True G1473929
TU1685654 lncRNA downstream 5838 62780279 ~ 62780618 (+) True G1473931
XM_036948428.1 mRNA upstream 3710 62747771 ~ 62760165 (+) False LOC110493236
XM_036950398.1 mRNA upstream 114350 62575985 ~ 62649525 (+) False LOC110494319
XM_036950399.1 mRNA upstream 114350 62575985 ~ 62649525 (+) False LOC110494319
XM_036950397.1 mRNA upstream 114350 62575986 ~ 62649525 (+) True LOC110494319
NM_001124637.1 mRNA upstream 235831 62507033 ~ 62528044 (+) True LOC100136666
XM_021569280.2 mRNA downstream 33216 62807657 ~ 62812224 (+) True LOC110494322
XM_036950408.1 mRNA downstream 52127 62826568 ~ 62838789 (+) False stat2
XM_021569284.2 mRNA downstream 53112 62827553 ~ 62839920 (+) False stat2
XM_021569283.2 mRNA downstream 53113 62827554 ~ 62839920 (+) False stat2
XM_036950409.1 mRNA downstream 53113 62827554 ~ 62839920 (+) False stat2
TU1684816 other upstream 52739 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 65060 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1206837 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 1764812 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 2659868 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 442507 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 884003 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 909649 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1788933 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1833813 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile