RNA id: XM_021569297.2


Basic Information

Item Value
RNA id XM_021569297.2
length 3187
RNA type mRNA
GC content 0.50
exon number 22
gene id pfkmb
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63104595 ~ 63121550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCCACTGTCCCATCCAGTCACTTTCCCAGTCAGCCAAGcagggagagtgaggggagaggagagagagtgacattcTACTGCACTATACCATACACAGCAGGGCTACCAGGATCAAGGCTAATTCTTATCTGCTGtcttttccttccttccctttTCTGGTCACAGGCAGTTCCAGGACCATGGCACACCCTAAAGACCACAGCAAGATGGGCTTCGGCCGCTCCATCGCCGTGCTGACCTCTGGAGGCGATGCCCAGGGTATGAATGCTGCTGTGAGGGCCACAGTCAGAGTGGGCATCTACACTGGGGCCAAAGTCTACTTCGTTCATGAGGGTTACCAGGGTTTGGTGGATGGAGGTGACAATATCAAACCTGCCACCTGGGAGAGTGTGTCTATGATGCTGCAGCTGGGTGGCACTGTGATTGGCAGTGCCCGCTGTATGGACTTCAAAGAGAAGTGGGGGCGTCTGAAGGCCGCCTGCAACTTGGTCAAACTGGGCATCACCAACCTGTGTGTAATCGGTGGTGACGGTAGCTTGACTGGTGCTAACCAGTTCCGTACAGAGTGGAGCGAGCTGCTGGCTGACCTGATCAAACAGGGTAAGATCACGGCGGAGGAGGCAAAGCGTTCTTCTCACCTCAACATCGTGGGCATGGTGGGCTCTATAGACAACGACTTCTGTGGCACTGACATGACCATTGGCACTGACTCCGCCCTGCACCGCATCATAGAGGTGGTGGACGCCATAACAACTACTGCACagagTCACCAGAGGACCTTTATCCTGGAGGTGATGGGCAGACACTGCGGCTACCTGGCCCTGGTGACTGCTCTGGCCTGCGGTGCTGACTGGGTGTTCATCCCAGAGATGCCCCCAGAGGACAACTGGGAGGAGCATCTGTGCAAAAGACTGATTGCGCAAAGGGAGCGTGGTTCTCGTCTGAACGTCATCATCATGGCAGAGGGAGCCCAGGACCGTAAGCAAAAACCCATCACCTGTGACCAAGTCAAAAATCTGGTATCCAAGAAACTTGGCTTCGACACCCGTTCTACCATCCTGGGACACGTACAGAGAGGTGGCACCCCCTCTGCTTTCGACAggatcctgGGTAGCAGGATGGGTGTGGAGGCTGTGATGGCTCTGTTGGAGGCCACCCCAGAAACTCCAGCCTGTGTTGTCAGTCTTTCTGGGAACATGGCCATCAGGCTGCCGCTCATGGAGTGTGTCCAAGTTaCTAAAGATGTGACCGTAGCCATGGCTGAGGGGAGATTTGAAGATGCTGTGAATCTCAGGGGAAAGAGCTTTCAGAATAACTGGAACACATACAAAATGCTGGCTCACGTGAACCCCCCAGAAGTGAAGAGCAACATCAATATTGCCATTGTAAATGTGGGCGCCCCCTGTGCTGGGATGAATGCAGCAGTGCGTTCAGCTGTCAGGGCTGGTCTCATCCAGGGACACCAGATGCTGGCTATACACGATGGCTTTGATGGCCTGGCTAACGGACAGATTGAGCCTATCACTTGGGCTCAAGTGGGTGGATGGACTGGGAAGGGAGGGTCCAATCTCGGTACCAAGAGAAACCTGCCAGGTAAAAACATTGAGCAAATCAGCCTGAACATTGCCAAGTTCAACATTCATTCTCTGATCATCATTGGAGGCTTTGAGGCGTATCTGGGTGGTCTGGAGCTGGTAACAGCCAGGGAGAAGTACGAGGAGCTGTGTATCCCCATGGTGGTCATTCCCGCCACCGTCTCCAACAATGTTCCCGGATCAGACTTCAGCATCGGCGCTGACACCGCCCTCAACACCATCACCATGaCTTGCGACAGGATCAAGCAGTCTGCTGCTGGCACCAAGAGAAGAGTGTTCATCATTGAGACCATGGGGGGATACTGCGGCTACCTGGCAACCATGGCTGGCTTGTCATCTGGGGCTGACGCTGCCTACATTTATGAAGAGCCTTTCCATATCCATGACCTGGAGCTGAACGTGGTGCATCTGATAGAAAAGATGAAGACCTCCGTGAAGAGAGGTCTCATTCTCAGGAACTCTAATGCCAATGACAACTACACCACACAGTTCCTCTACAACCTGTACTCAGAGGAGGGCAAGGGCACGTTCGACTGCAGGATGAACATCCTGGGACACATGCAACAGGGTGGAACCCCCACCCCCTTCGACAGGAATTTTGGCACCAAGATGGGAGCCAAGTCTGTCCTGTGGCTGACTGACAAGCTGAAGGAGTGCTACAGACACGGTCGTATCTTTGCTAACACACCAGATTCTGCCTGTGTGCTGGGCATGAAAAGGCGATCCCTGATCTTCCAACCCCTGACTTCCCTCAAGGAAGACACTGACTTTGAGCACCGTATCCCAAAGACTGAGTGGTGGCTGAAGCTGAGGCCCATTCTGAAGATCCTGGCCAGGTATGAAGCTGTGGAAATAGACACCTCTGAGGTGGCTGCCATGGAGCACATCATCAAGAAGACAGGAGAAATCAAGGGGGGCAAAATTTAAACAAaccaaataaacacacacaacctcacataaacacatacatacacacccttAGTCTTGCACCTAGACCCGCCCGCACCTATGAGAAGAAAGGAACCTGAGGATCTGTCTTTTTCAaccatctatttcctgtgtttgaggggtgcAAAATCCACTCGTCACTTAAATCTGGCTGGATGGATTGCTTTCATTTTAATCCTGTGACTCTTTCATACTCTTGCTTGTGTCTGTCGTTTTTACCCGTTAACGTTACGACCGTGGAAATgtttgtaatgacctgtcaaacacatCCCGGTAATGGCTGAAAGGGGCTCAATGGAAAACATTGTATTTCCGTTGTATCTATAAGAACGCTAAACTTTGTCTGAGATTAAACGCATAGTCTCGACACTTGCATcacaagaaagagaagaaagatgaCGTTATTTGATGGGTGTACATTTTGTGCGGCGCTGATAACAGTTAGAATTGAATTgaatacatttgaaatgtttacaaaagaGATGCTCTAAAATGAAAGCAATTTCCGAAAAGGAACACTCGGATTATAGTAATACTATGTCTGATCTCGCAAACGATGTAAAGTATGTATCATCAGGTGTCATCTACTCTaagacatattgacatttgaCAATAAATGTAATACCTAATTTCCCACCAAAA

Function

GO: NA

KEGG:

id description
K00850 pfkA, PFK; 6-phosphofructokinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685798 lncRNA upstream 68863 63035341 ~ 63035732 (+) True G1474055
TU1685765 lncRNA upstream 122206 62981211 ~ 62982389 (+) False G1474026
TU1685766 lncRNA upstream 122206 62981211 ~ 62982389 (+) True G1474026
TU1685763 lncRNA upstream 124797 62979400 ~ 62979798 (+) True G1474024
TU1685760 lncRNA upstream 130201 62971531 ~ 62974394 (+) True G1474022
TU1685858 lncRNA downstream 12213 63133763 ~ 63134241 (+) True G1474113
TU1685875 lncRNA downstream 78596 63200146 ~ 63201180 (+) True LOC110494337
TU1685876 lncRNA downstream 97976 63219526 ~ 63226503 (+) True LOC110494339
TU1685921 lncRNA downstream 123461 63245011 ~ 63245267 (+) True G1474175
TU1685922 lncRNA downstream 123823 63245373 ~ 63245598 (+) True G1474176
XM_021569289.2 mRNA upstream 136051 62960089 ~ 62968544 (+) False myl6
XM_021569290.2 mRNA upstream 136051 62960089 ~ 62968544 (+) True myl6
XM_021569288.2 mRNA upstream 145626 62956724 ~ 62958969 (+) True tsfm
XM_021569283.2 mRNA upstream 264675 62827554 ~ 62839920 (+) False stat2
XM_021569298.2 mRNA downstream 3338 63124888 ~ 63141041 (+) True itgb7
XM_021569300.2 mRNA downstream 37513 63159063 ~ 63188421 (+) False espl1
XM_021569299.2 mRNA downstream 37623 63159173 ~ 63188421 (+) True espl1
XM_021569304.2 mRNA downstream 66945 63188495 ~ 63194667 (+) True pfdn5
XM_021569303.2 mRNA downstream 74529 63196079 ~ 63201204 (+) False LOC110494337
TU1684816 other upstream 393459 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 405780 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1547557 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2105532 60972478 ~ 60999063 (+) True G1471723
TU1682011 other upstream 3000588 60101892 ~ 60104007 (+) False G1470607
TU1685904 other downstream 95398 63216948 ~ 63217594 (+) True G1474159
TU1686655 other downstream 536894 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 562540 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1441824 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1486704 64608254 ~ 64622169 (+) True LOC110494386

Expression Profile