RNA id: XM_021569305.2


Basic Information

Item Value
RNA id XM_021569305.2
length 3132
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110494340
representative True

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63232397 ~ 63238751 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGCCGCCTACATTTAGTTAGTTTGCAACCTTGAAATAGTTTAAAGTTCGTAACTAGATGGTTATTAGAAATCATTACTAACAATTTATCCGTGAAAAGTAGCCTATTTTACTGGTATTTCATATGTTGCTCAAATTTACAGTAAGAGCGAGCGAGGGGTTGCAACTAAGCATCAACAAAAGTCAAAGGTTTATCACAACAAAAGCCAGTAAAGTCATTGCTTTACTGTAAATGTCATTTTATGGTTATGGTTTTTGGATTGAAAGCATGGCGGTGACCCCACGGCGTGTTCGGCTCAAGCCCTGGCTAGTGGCCCAGGTGGACAGTGGgctctacccaggtctggtgtggATCGATCGAGACAACAAGCGCTTCAGGGTCCCCTGGAAACACGCTACGCGCCACACCCCCCAGCATGAGGAAGAGAACACAATCTTTAAGGCCTGGGCAGTGGAGACAGGAAAGTTCCAGGAGGGTATTGATGACCCTGACCCTGCCAAGTGGAAAGCCCAGCTCCGCTGTGCCCTCAACAAGAGCAGAGAGTTCAACCTTGTCTACGATGGCACCAAAGAAGTCCCCATGAACCCCCTGAAGATCTACGATGTCTGTGACATCCcacagcccctcagtaacccagGATCCTCAGACTCTGGGTCCTGGACGCCAAATGACTGTGATGAAGATGAACCAGATACTCCAGAGCCCCTTCCTCCTTATCCAACATCCAATGGCACCAGCCCCACTCTAATGTGGTCTCCTCCGGGGTCAGtatcacccctccacccccccagCTGCCCCCCATCAGTTGAAGTGTGGCCCAAAGAGGAGGTTAAGCCGTGGCCAAAAGAGGAGCCTTTGGATGTGGAGATGCAGCCCTCCCCTGAGGAGATGGCGCCCCCTCCTCCACTTGACATGCCTTCCCCTCCCATGCCTGACATGATGTTCGCCTCCCCAGAGATGTGGATCAGCTCCTTGCCCAtgACAGACCTGGAGGTGCAGTTCCAGTACCGGGGTAAGGAGGTGTGTCCAGCCATGACAGTCAGTAATCCCCAGGGCTGCAGGCTGTTTTACGGGGACCTGGGCCCCATGGTCAACCAGGAAGAGCTGTTTGGCCCTATCAGCCTGGAGCAGCTGAGGTTCCCCTCTACCGAGCACATCGCCAACGACAAGCAGAGGGTCTTCACCAACCGCCTGCTGGACGTCATGGACCGAGGCCTCATCCTGGAGGTCAGTGGCCATGACATCTATGCCGTCCGCCTTTGCCAGTGCAAGGTGTACTGGTCAGGCCCCTGTGCACCCAACCCCAATGCACCCAACCTCATAGAGAGGCAGAGGAAGGTTAAGCTGTTCTGTCTGGAGTCGTTTCTCAGCGGTGTAATAGCCCATCAGAGGGGCCAGTCGGCCAGCCTTCCTCAGTTCGACATCAACCTGTGCTTTGGAGAGGAGTGGCCTGACAGCAGACCCAGGGAGAGGAAGCTCATCATGGTGCAGATCATCCCTGTGGTAGCACGTATGATCACTGAAATGTTCTCAGGTGACTGCATGCGCTCCTTCGACAGCGGCAGCGTGCGCCTGCAGATCTCCATCccggacatcaaggacaacatcgTTACCCACCTGAAGCAGCTGTACCGCCTGCTGCAGACCCACCAGGGCCAGGAGGGCTGGCCTCAGGCTCTGCCCCTGGGGGCTGGTATGAGCCTGCCCCAGGCCCTGCACGCCCAGTGAAGCTACCCAGTCCACCATGGCCCTACCAGGCCAGTCAGTCTCATACACAGCTCTGTCTGGACACTGTCTCCTTACTGCTGCCTCTACTGCTGGGTTATGTGAAGACCTGTAGTCAGCAAGCTAGTACTTATGTTTATAGAGGCGTGTTAATCCGAATAGGAAAAGGGATTGCTTCAATTTAGCCTTTCCCCTTTCTTTTGCTATTATGTTCTCTGAAAGGAGCCATGTATATATTGTGGTAAATGCTGCTAAACAGGCACTGTAAGACTACTACTGTGGCAGTCAGTAAAACATGGATAGTGTCTGTCTGCAGTTGTAAAGCCCCGTGGCCTTGTACTCAATATAGGCAGAATTAGAGGAGCATTGGATGGCATTATGGGCAAAAGTCCTGTCAGCTGCAAGGCAACATTGAACATAGTCAATGAGTTACAGGCATAACCCTTGACCCCATGTTACAAAATACCAGTCAGTTATCAAGCTGTGTCCTGGTCCTTGTTGCTCATGTCATTTTGTCTACTACCTGTATTTAACCCATGAAGAATATGTTTAAGTGCTAAAGGtagatatttatatatatttttttcttttggAGAAAAAACATGCAAGTGGTTAATCCATTATGTGAACTTTTATGATACACACTTTAATAGTTATCTTTCCTTTCTATTGGTTATTATACATTTGTATCTCATCATGACTGCTGAGATCCATTCTAACTGTTCCTGCAATATATATCCTATACCCTTTACTGGTTTGTTTATGCTAATACTAGTAGATAAGATCAGGTCAAGGTAGAGGATTCGGTGAACCAAATGGATTGTTTATTTTCTGATAGACCTTATCACCATGTATAGCCTCCATttataattttatggaatttaaACCATATGTTTTGGTCCATGAAATTAGTATAAGTGGTGTCGCTGCACTTTTGAGAGTAAATGGAGTCTTATGCTTAGATAGCATTTCATTTTTCAATAACTTTTATCCTAatgatttgtatatattttttgaaaaacGCCCATAACTAGGCAAGtgatcagattttttttaaatgaagggaATCCGAAATGAAAAAGGGTTTCATTCAAATTGACAGTTATACCTGCAAGTGTTTTATTCACTGGTATTTTGTCAGTTTTACTGTCTAGTTATTAAAGTGGTTGTGTGTTAATATACTGACACCATATGTATTTGATTATTATAGAAGGATGAAACACGTATGCATGAACATGATGCAGTAACCATAAAATGCATTAGAAATACACATTTACTTCAAGATTACATTTTCAATGGATGCTAAATATCCTTCGCTATAATGTTGACTGAGCTATACAGAAAACATTTAAAAGTAAAATGCAATAAACATATTTCCCAAAACCCTCAGAGCAAGTTCTTCAGAG

Function

GO: NA

KEGG:

id description
K10154 IRF6; interferon regulatory factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1685876 lncRNA upstream 6242 63219526 ~ 63226503 (+) True LOC110494339
TU1685875 lncRNA upstream 31565 63200146 ~ 63201180 (+) True LOC110494337
TU1685858 lncRNA upstream 98504 63133763 ~ 63134241 (+) True G1474113
TU1685798 lncRNA upstream 197013 63035341 ~ 63035732 (+) True G1474055
TU1685766 lncRNA upstream 250356 62981211 ~ 62982389 (+) True G1474026
TU1685921 lncRNA downstream 6260 63245011 ~ 63245267 (+) True G1474175
TU1685922 lncRNA downstream 6622 63245373 ~ 63245598 (+) True G1474176
TU1685927 lncRNA downstream 10080 63248831 ~ 63249046 (+) True G1474181
TU1685945 lncRNA downstream 115606 63354357 ~ 63354689 (+) True G1474199
TU1685946 lncRNA downstream 115967 63354718 ~ 63354917 (+) True G1474200
XR_002469262.2 mRNA upstream 6185 63219189 ~ 63226560 (+) False LOC110494339
XM_021569309.2 mRNA downstream 10813 63249564 ~ 63265504 (+) False LOC110494341
XM_021569307.2 mRNA downstream 10813 63249564 ~ 63265507 (+) False LOC110494341
XM_021569308.2 mRNA downstream 10813 63249564 ~ 63265508 (+) False LOC110494341
XM_021569310.2 mRNA downstream 10813 63249564 ~ 63265511 (+) False LOC110494341
XM_021569311.2 mRNA downstream 10813 63249564 ~ 63265513 (+) True LOC110494341
TU1685904 other upstream 15151 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 521609 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 533930 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1675707 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2233682 60972478 ~ 60999063 (+) True G1471723
TU1686655 other downstream 419693 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 445339 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1324623 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1369503 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1516570 64755321 ~ 64774706 (+) False LOC110494389

Expression Profile