RNA id: XM_021569308.2



Basic Information


Item Value
RNA id XM_021569308.2
length 2863
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110494341
representative False

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63249564 ~ 63265513 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTTCTCCCATAAGGAATTTGACACTCAGTTGAACAGTAACACCCTTATTGGATGCTTTCAGTTCTATGGATCAATGCACTTTTGAATCTGGACTTTGCCCCTGTCTTTTATGACGAAGTCTTGGTAGTATTTGTTCAGAGTTCCGCAATAGAAACCCCAGGCCTGGAATATGAACGGTATCTGGAGAAGAGAGAAATAGATTCATCCATAAATAACACAGAAAATACATTGCCGGACACAACAGGTGTGTGACCCAGGGGTTCCAGGATGTACAGTCCCTATGGCTTGGACTCTAGCAGTTACGCAGGATCTGTCCAGTCCGTCCAGTCCAATGGTCTTTCAGTGGATGATCGGTTATCACAGATATCAAATTTGTCCAGACCAAGTGCCAAGTCAATATACATGCAGAGGAAGGAGTATGCGGACTCTATCACCAAGATGATGAACAAATTCCAGTACAGAGTAGAGCATCTGTTCACCTGTGACCTGGATGGTAGGGAGGTGTGTGATGTGAATGACTGTGTTGAGAGGCTAAAGCTGCTGGATGGGATGGGCCGGGTCTGGGGGCAGGACATGGTCCTGGAGGTGCGGGATGGGAACCTGCTGCTAACAGACATCGAGACTAAGGAGGAGCTGGAGTCCCTGGCTCTGAGCAGCATCACGGAGCTAAAGGCTGTGATGGACAGCTGTGTGTACAACTCCCTGCTGACTGCGACCGTCAAGGACCACAGCAAGAGGACCACCAGTGTCTTCATTTTCCAGTGTGAGGACCTCAGGgCCGATTTCATAAAACGGGACCTAGAGAGAGTGTTCCCTCACCAGAGAGATGACGTTAACAATCACAGCAACAACAGGAGCAATCTGGAAGTTATGGCTGGCCATCAAATTGTTAGGAATCTTCAGAATGCTGACCCACCAACTGAGCAGAGAGAATGGACTCCTCCCGAAGATCCCTCAGCTCAATGGAGCGCTCCGGACTATGATGAAGATCTTACACCTGTACCTACGCCTACACCGCCCATGCCCAGAGAAGAGCCCCTCCCTCCCAGGAAGGAAACCCCAGTTCAACACCTCTTTATGGAGGaggagcctgagcctgagccagCCCTTGTCTCTCCTCCACGCCCATACACAGAGACTAATAGGAATGTGGACATCGTGAatcatattttcaatgacattGAGATCTTTATGGGCAAAGTCGCTGCTGCAGCAGCCAAAGCcgagaagaagaaaaataaaaagaagaagaataaGGATAaaggtgtgtgtttctccttaTTCCAAAGAAGGCTACACCAGTGGAGCCAGAGATACCGTACGGGGTATACATTTAAAGGCATTAAAGGCATGCCACCACCAGAGGAATTTGAAACCTGTCTCCAGAAAATCAAATGCGGGTTCAACCTTCTGGGGGAGCTCAATGGAAAGATTAGTCATCCCAGTGCTCCGGAATTTGTCCACAGCCTCTTCTCCACCCTGGCATTTGTGGTGTCCCACAGCCCTGAGGAGCTGCCCCCCACCATCGTGGCGCCCCTGCTAAAGCCTGAGTGTATCCGTCTGCTGAGTGAGGAGGCCACTCCTGAGGAGGACCAGCTGTGGCAGTCGCTGGGAGACGCCTGGAACGTCCCCAGTACAAAATGGCTAGAGGATGATGAGGACATCCCTACCTACACTCTGGAGTTCTATGATGGTTGGCAGCCCCTGGAGTTGACCCGCTCTTTCCCAGGGAGAGAGCCTGAGAGAGGGCAGCAGAGTCAGAaacagagtcagagtcagagtccaCGCTCCACCACTGAAAAGAGGTCGGCCCCATTCAAGCCTCCACCATCACGTCCAGATGTGCCAAACTCCAGTTACATGCGTGTGATGTATGACTTCACGGCAAGGAACAACAGAGAGCTGAGCATCTCCAAGGGAGAGGTGGTTCAGCTACTGGACATGTCAAAGAAATGGTGGCGAGTAAGGAgcgacagaggagaggagggcttcaTACCCAACAATGTACTGGAGTCACAGGACAAGGAGCAGGAAAAGCAGGAAACCAGTGGTCCTCCCTCCCTAACCAAGAGGTCCAAGCCTGACCAAGTGAAGGCCTGGCTAGAGTATAAGGGCTTCAGTAAAATcACGGTGCGCTGTCTGGGTGTGCTGAGTGGCTCTATGCTCCTGGGGATGACGAGAGAAGAGCTGAAGATAGTGTGTCCTGAGGAGGGGGGGCGGGTTTTCTTCCAGCTCCAGAACATCAAGTCTACCATGGCTCTTGCCAGTGAGGTAAGGCCCATAGAGCCTtaggaggggaggagacgggaggaCCAGAGTCACAAATGTGTCGTGACTTTTAAGTTTTATCCCTTTTCGCTGTGCAATAGAAAAATTCTGATtataactactgaaaacactgagTAAGCTGAGTTTATTTAAAAGTATGTAGCGTGGAAGTATCAAAACTCTATATTTTTTTGTTCCATTTCATAATCCAATATTTAAAGAAAGAGTCtctctataaatatatatatatattctgtgtACACTGTTAACTTCAGTACTATATTTAACCATATGTATTCTATAAAACCAGTGTTGATGCCACTTGATTCTATGATTGATCTTGAGGATTTTATTAAAGTCACCATTTCTACATGCATAAATGAATGTTAAGTGTTACAATACTTTTTCTGTATAGTATCGTGTTGTTAATGTAATGTAATCAACTGACATATATTTTACTTCGGTAGTGAGTAAAATATATGTACACTTCAATGAGTAAATCACATTATATCAAATCAAGTCAGTCTCTATAATCTAAGCATGTATCTCAATGTTGGAACTGTCTatccacatacagtacagtaccagtcaaag

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1685927 lncRNA upstream 518 63248831 ~ 63249046 (+) True G1474181
TU1685922 lncRNA upstream 3966 63245373 ~ 63245598 (+) True G1474176
TU1685921 lncRNA upstream 4297 63245011 ~ 63245267 (+) True G1474175
TU1685876 lncRNA upstream 23061 63219526 ~ 63226503 (+) True LOC110494339
TU1685875 lncRNA upstream 48384 63200146 ~ 63201180 (+) True LOC110494337
TU1685945 lncRNA downstream 88849 63354357 ~ 63354689 (+) True G1474199
TU1685946 lncRNA downstream 89210 63354718 ~ 63354917 (+) True G1474200
TU1685948 lncRNA downstream 107481 63372989 ~ 63450910 (+) True G1474202
TU1685915 lncRNA downstream 134355 63399863 ~ 63409817 (+) True G1474170
TU1686399 lncRNA downstream 189605 63455113 ~ 63455349 (+) True G1474601
XM_036950417.1 mRNA upstream 10813 63232397 ~ 63238751 (+) False LOC110494340
XM_021569305.2 mRNA upstream 10813 63232745 ~ 63238751 (+) True LOC110494340
XR_002469264.2 mRNA upstream 23004 63219189 ~ 63226560 (+) False LOC110494339
XM_021569315.2 mRNA downstream 91164 63356672 ~ 63372554 (+) False LOC110494344
XM_021569314.2 mRNA downstream 91166 63356674 ~ 63372554 (+) True LOC110494344
XM_021569319.2 mRNA downstream 200593 63466101 ~ 63471249 (+) True LOC110494347
XM_036950422.1 mRNA downstream 251228 63516736 ~ 63543481 (+) True LOC110494349
XR_005037047.1 mRNA downstream 309052 63574560 ~ 63580589 (+) True LOC118940486
TU1685904 other upstream 31970 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 538428 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 550749 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 1692526 61556319 ~ 61557038 (+) True LOC110494283
TU1683229 other upstream 2250501 60972478 ~ 60999063 (+) True G1471723
TU1686655 other downstream 392936 63658444 ~ 63663254 (+) True srsf3b
TU1686672 other downstream 418582 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 1297866 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 1342746 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1489813 64755321 ~ 64774706 (+) False LOC110494389

Expression Profile


XM_021569308.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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XM_021569308.2 Expression in each Bioproject

Bar chart with 12 bars.
XM_021569308.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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