RNA id: XM_021569331.2


Basic Information

Item Value
RNA id XM_021569331.2
length 2181
RNA type mRNA
GC content 0.44
exon number 3
gene id cdkn1a
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 63665848 ~ 63671434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGTCTTTCATAAGTCTGAACCGCAGcctttgactactttaaaatggctgAAGCATGGGGGAAGGTGCTGCCGATGTTAAAATTGCcatttggccactagaggcctctatcgtTCTCTACTATAAAACCCCACTTCTGCATCACTAGAACACTGAGAAAGGTATCGAGCAAAGAGAAGCAGCCCTCAGTGAGGGTTTGAGTTTATTTAGTTGTGTCACAAGGATTTCGTTTTGAGAAAATTGGTATGCTAAGAAAAAGTTTACTTAACGTTGGCTAACGTCGTTTGTTTAATTTGATCTTCAAAGAGTAACCCGCATAAACCTAAAACGGGACCTTTGCCTGACGTTTACATTAGGCTAGTTTAAATAACCAGAACAACCATGGCCAGTCGTAAGCACATCCTGAGCTCTCTGGGGAAAAGTCCTGCCAGGCAGAACCTGTTTGGCCCAGTTGACCGTGAGCAGCTGCAGCAGGAGTACCAGGACACCCTGCGCAGAGACCTGGAGGACGCCTGTCGCCGCTGGGGCTTCGACTTCCTGTCAGATAAGCCTCTGGCTGGGGGAGACTTCCAGTGGGAAGAGGTACCGGGCACCAAGGTGCCTCTCCTCTACCTGCCCTACCTGTTGAGTCAGGGGGAGGCACAGAAGATCAGAGGGCCGGCAGCATCCACAGGGAGGGTCAGGGCGGGGCCATGGCACCGTGGCAAGGAAAACATCCCTTGCACCCCTGAGAAGTACAGAGCCAACCTCCAGAACCTGGAGAAACCGCAAGACAAGAACGAGAACAAACTGAAGAGGAAACAGACCAACCTCACAGATTTCTACCAAGCCAAGAAGAGAGTGGTGGGTACGTCGCTTAAGTCAGGCCGGTGATTTCAGAGACACAGTCACAGCTGCCAGGGAGCCAACAGTCGGACAAAATCACAGCAAGCACTACTTCTCTCAGGAACCCACACGCTGAATAGActgagtacatacagtacacttaCCAGGAGGAATACATAACCAATCCTCTAAACAAACACAGTGAAAAATGAAACAACCTATTTTATTGCATCCATTACCGATGCatactgttttatttttttatccatgTAGGTTAACCGATGTACAATTGATTTCAATGTAAGGGGGCTTGTGTTCTCCCTGTGGTAAGGGAGGGACATTCTAATGGTGCATCCATGACCATTTGTGAGTCATGAAAGAACATCCTCTGCACCTTTATGACCGTTTAGTGTAAGGAAGACTTGAACATCTAAGTCTGGACAGTTAAGGTCCTGCATTCCACAGCACTGATATAGACCAATCGAAACCATGCCTCTGGGTCTACGCATAAATCGTCTTGTTTTGATGACATGTTGAAATTCTGAAACCATACTGTTTACGGTGCTGAGTTTGAATCTACTGTAATATGGTGTCACATTGAGAGGACGCTTGTAAAAAATGACCGCAACAACACAATAGTCTTCAACAGTCTTCCCAGTTCAAATATCCAAATGTATGGATTGATGTTTTTTTCATTATGATGTGTCTCTCATGAAGAGGGCCAGGAATCATGTTATTGTCTGTCATTTGCAAGCACTTCCTTTCCAATGTATGTGTTGTTGTACATGAGATTTCACAATTTAAATATGTGTCTCAACATGTACTCATAGGAATCTACTTGAAGGGTACTGCTCTGCATAAAATTATGCAAACTCCTGTATAGAAATGgcactcttttttttttctcacctttttatttaagaacaaattcttattttcaatgacggttaggaacattgggttaaaactgccttgttcaggggcagaattacagatttttaccttgtcagctcggggttttgatcttgcaaacttccggttacttgtccaatgctctaaacactaggctacctgccacccaatgtCCCCCTTTCTACCTAACTAGGGCTTCTTGCTATAATACTCTTGGGAATTTGTTGATAGGGACCTCTGCTATGTTCTTTCAAGcttttcaagtatttttacaaAGTCTATTTAGCATCTGAACACAAAGCCAGACATTCACGTTTCCTTAGATACAGTGAGGGGGAAATTTGATCCCCTACTGATTTTGttcgtttgcccactgacaaagaaatgatcagtctataattttaatggtaggtttatttgaacagtgagagacagcataacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1686647 lncRNA upstream 15468 63651034 ~ 63651292 (+) True G1474803
TU1686558 lncRNA upstream 21351 63645011 ~ 63645409 (+) True G1474725
TU1686481 lncRNA upstream 121165 63543506 ~ 63545595 (+) True G1474650
TU1686478 lncRNA upstream 152344 63514147 ~ 63514416 (+) True G1474648
TU1686475 lncRNA upstream 159924 63506409 ~ 63506836 (+) True G1474645
TU1686660 lncRNA downstream 1466 63672900 ~ 63673428 (+) True G1474813
TU1686666 lncRNA downstream 6328 63677762 ~ 63678148 (+) True G1474819
TU1686674 lncRNA downstream 20370 63691804 ~ 63694554 (+) True G1474827
TU1686683 lncRNA downstream 37458 63708892 ~ 63709124 (+) True G1474833
TU1686685 lncRNA downstream 38262 63709696 ~ 63709960 (+) True G1474835
XM_021569327.2 mRNA upstream 3505 63658373 ~ 63663255 (+) False srsf3b
XR_005037047.1 mRNA upstream 86171 63574560 ~ 63580589 (+) True LOC118940486
XM_036950422.1 mRNA upstream 123279 63516736 ~ 63543481 (+) True LOC110494349
XM_021569319.2 mRNA upstream 195511 63466101 ~ 63471249 (+) True LOC110494347
XM_021569314.2 mRNA upstream 294206 63356674 ~ 63372554 (+) True LOC110494344
XM_021569334.2 mRNA downstream 12609 63684043 ~ 63691032 (+) False tmcc2
XM_021569335.2 mRNA downstream 12858 63684292 ~ 63691033 (+) False tmcc2
XM_021569338.2 mRNA downstream 30644 63702078 ~ 63705600 (+) True bysl
XM_021569346.2 mRNA downstream 68928 63740362 ~ 63779877 (+) False dstyk
XM_021569349.2 mRNA downstream 68929 63740363 ~ 63779877 (+) False dstyk
TU1686655 other upstream 3506 63658444 ~ 63663254 (+) True srsf3b
TU1685904 other upstream 449166 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 955624 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 967945 62698503 ~ 62698815 (+) True G1473171
TU1684022 other upstream 2109722 61556319 ~ 61557038 (+) True LOC110494283
TU1686672 other downstream 12656 63684090 ~ 63688090 (+) True tmcc2
TU1687795 other downstream 891940 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 936820 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 1083887 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 1083887 64755321 ~ 64780475 (+) False LOC110494389

Expression Profile