RNA id: XM_021569359.2



Basic Information


Item Value
RNA id XM_021569359.2
length 2566
RNA type mRNA
GC content 0.47
exon number 2
gene id fndc10
representative True

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64063770 ~ 64066586 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAAAGACTACACACATCAGCCTTGAAGACTACATACAGCCTAACACCAAAtgtgggaaagaggagagggaggaaggacggATGGGTGGAAGGAAGGATGGAAAGGCACAAAAAAGTAACGGAAATGGTGTCAGGGAAATTAAGATTGGAGTGGGGATTTGAAATGATGACTCATGATGTAATTGACTGCTGATGACTAGGCTACAAACattctgacagacacacacaaacacacacttcctcACAACAACCATCAAAGAAAGGAGGACAAGACTGGGCCAAATGTGATTAAAAAGATAACTGCCGCGGTCCTCGTTCTCGAAAACCCAGACATATTGTTTTCGTGCTCTGCACCGGGGAGAGGCTACACCGCATTGTTGGTGTAAGACTGTTATGGAAGCCACATGACCCggtacctctctttctcttctcggATCTCCGCTGACAATAACGGCGCAGTCCACTATCAATTTGCACTAAATACAGTGAGAGTGAACCTGTAAAACGGGAAGACATGAGAGGCCAACCGCGGCTGTCCCTGGTCGCCTTCTCGGCAGTGCTTCTCTGTCTGTGTCGCGCAACAATCGCAGTTTCCAACCAGACACGCGGCGGCCGCGATGCGCAATTACCATCAGCGTCAGCATCTTCATCAGACGAGGGAAGCGAGAAGGACGTGGATGTCTCCCCAAACTCTGGCCAACACCATAACTACGGTATTGATTATTTCAGTAAGAATGAAACTATGAGCACACCAAAGCTGGAGGGGGACCTCAGCTATAGGAATGGCACTTCATCCATCAACATCAGCAGAGGCAATACAGGAACCACTGTGATATCTGGCAGGCCAGACCATGTGCAAGGTGAAACAAGGTGGGTCATGGCCATGGAGGGAGAAGTGGCACCAATATGTGCCTACCGGGTAACAGATGGGGGAATCGGGGGGCGGTTGTGTTTTCGACACACACAGCAGGGGTTCAAGTGTCATCATGGAGACTGCCGGACTGTTCCGTCTCCAGGAGGGTCCCTGGTGGCCAATGTTCTGACCAATGGTAGCGTGCTGCTACAGTGGACATACGAAGGTCTGAGGGGAGAGGCTCAAGGGACAACCAAAGGAAACACAGCTGGATATGACCTAGATAAACAAGAGACTAAGACTAGAGGAACAAGTGTAGAGGGACAGAAAGGGGCTCCTAGGACAGGGCTTGGGGTAGAGAGCAGGATTTTGATTGCACCACCAAAGAGGGTATTCAGTGGACGACGGGTCAGAAGAGGTGGGTTTGCGCTGAGCTGCTGGTGGAATGGGAGCTACACCCAGTTTGAGTGCGCTGGTCTTCATCTTGGCTCCGGTTGCAGGGACTTCCTGCTGACTGAGCTCCATGAGAACGTCCCCTACCGCATCTGCCTACATCCGCTGGCCTCCACCCTGACCCCACCGCCCCACTCAGGAGGAGCAGGCCAAAGACAGGACCTGGGAGACTGCTTGGAGTTCACTGTCTCACCATTGGGCATGCAGGACATTGTGATCGCCATGACAACAGTGGGAGGAGCCATCTGTGTGATGCTGGTCATCATCTGCCTGTTGGTGGCATACATCACTGAGAACATCATGAGCCCCACGACACAGCACTCACActccacataccacacacactctcaccaCTAATGTCactcacacacgcaaacacacgcacacacacgggcacacacttGTATCCTTGTTAAGCAATATCACACAAATGTATTTTACTCCCACATCTAAATCAATACACTAAAAACACATGTATGTAACATACAGTGATtgaacaaccacacacacataatagAAATCTCACACAGATTCAGGGCATCGCACCTTACACACGACTAAAATACATCATACCTGTGCAAGCTTGTGGAAGAACGATGAACTAAGCCTCCGAATAGACCACCACACTTTCAAATAGTATTAAATACTTTTCAAATGATAGGGCTCAGATAATTACAtatctgtttgtgtgtgcatatttTCCTCTCATGTGTATTTATCTCATAAGCCTTTCTGCTAGTAATCAACGTGTGCTGTGTTAGAGATAGTAAGATGGTAGTCGGTAGGCCTACCTAAGAGTGAAACATTGTCTACAGTTGAGCAGAGGAAAAACAAATGTGTACCAACCAGTATAAACCAGCATTTCTAAAGATGTCTCTATTTTTTTGGAGCCCAGTTATAGATTGGTTATGATTACCTCTGTTAAGTGCCAAATAATAAGTGCAAGCACAGTAGGTAATTTAATTAGTGCTTTCTTCATTTTTACCTCAGAGAGGATTCATTTAATTAATGTCAACAATTAACCCCCATGCAGCCAAGAATGATTCCTATTGCCATATCTTGTCATGGCTGTATGTCATAGACCTTCAACAGGCTGGTCTGCTTTGCAGTCTGCCAAATACTGTACCAAACCTCTATTTTAGGAGGCTCCGTGGAATCAATAAAACACACcgaatatgtgtgtatgtgtacccgTGTACAGAAAATATTATTAATATTTGTATCTATCCGTCCATCGTACAAATAAAATATAGATGCCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1686874 lncRNA upstream 82916 63980619 ~ 63980854 (+) True G1475012
TU1686870 lncRNA upstream 85850 63977668 ~ 63977920 (+) True G1475008
TU1686867 lncRNA upstream 88224 63975346 ~ 63975546 (+) True G1475005
TU1686857 lncRNA upstream 97197 63966360 ~ 63966573 (+) True G1474995
TU1686838 lncRNA upstream 112685 63944119 ~ 63951085 (+) True G1474977
TU1686933 lncRNA downstream 23171 64089757 ~ 64091921 (+) True G1475066
TU1686939 lncRNA downstream 29119 64095705 ~ 64096426 (+) True G1475072
TU1686945 lncRNA downstream 40646 64107232 ~ 64107471 (+) True G1475078
TU1686981 lncRNA downstream 112670 64179256 ~ 64180301 (+) True G1475111
TU1687099 lncRNA downstream 306959 64373545 ~ 64379198 (+) True G1475223
LOC110493238 mRNA upstream 5125 64056997 ~ 64058645 (+) True LOC110493238
XM_021569358.2 mRNA upstream 7378 64053228 ~ 64056392 (+) True LOC110494368
XM_036950426.1 mRNA upstream 10984 64043155 ~ 64052786 (+) True LOC110494367
XM_036950425.1 mRNA upstream 144214 63909040 ~ 63919556 (+) False LOC110494366
XM_021569356.2 mRNA upstream 144214 63909042 ~ 63919556 (+) False LOC110494366
XM_021569360.2 mRNA downstream 185 64066771 ~ 64071414 (+) True ssu72
XM_021569361.2 mRNA downstream 8331 64074917 ~ 64079438 (+) True LOC110494371
XM_021569365.2 mRNA downstream 53935 64120521 ~ 64128339 (+) True sdhb
XM_021569373.2 mRNA downstream 62366 64128952 ~ 64133653 (+) False mfap2
XM_036950428.1 mRNA downstream 62366 64128952 ~ 64133653 (+) False mfap2
TU1686672 other upstream 375680 63684090 ~ 63688090 (+) True tmcc2
TU1686655 other upstream 400516 63658444 ~ 63663254 (+) True srsf3b
TU1685904 other upstream 846176 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 1352634 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 1364955 62698503 ~ 62698815 (+) True G1473171
TU1687795 other downstream 496788 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 541668 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 688735 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 688735 64755321 ~ 64780475 (+) False LOC110494389
TU1688642 other downstream 1236831 65303417 ~ 65304128 (+) True G1476510

Expression Profile


XM_021569359.2 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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XM_021569359.2 Expression in each Bioproject

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XM_021569359.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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