RNA id: XM_036950437.1


Basic Information

Item Value
RNA id XM_036950437.1
length 2634
RNA type mRNA
GC content 0.44
exon number 5
gene id cldn19
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64256904 ~ 64280613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttctattttttttctctAAACCCTTGTTCAGCCCTCGAAGTGCGGAGCAGATGGAAAGAGTGttgatgaaagaaagagagagatagaaagtcaGGGTGAAACCATGCCGTATCTGAGGAAGCCTAGTGAGCGTAGTGACCGAGCCTGACGACCTGATCACCCCAGACAACCAGGAAAGAGCAGTCTGGTCAACCTCAAGACCCGGACATACACACTTccaacaggagaaagagaaataaacagagagagagagtgagagagagagagagagcgagacagagatagagagtgcgaaagagagagaggagaacgccagatgtgtgagagagagcagagagaaggagatgctCAGAGAGAGCGGACAGTGACCAGAAAGGAGaccagaggaagaaagagaaacgAAAGAGACCACTGAGAGAGTGCCTGGGTTAGTGCTGAAATCTGGATTGTCTGTAAAGGGGTGTTTGACTTTTGGTTCTGTGGCTCTGATAGACAACGGGAGCTCTGAGAAACAGTTTGGGGGAGTTCTGTGTTTCACTCTGCCAACAGTATTACCTGTGTGTGGAAGCGAGACTGCTTCAGGTGTTCTGAAGAGGACAAAATAGTAGCCAAAGAAAAGGAGGACAGAAAGAGGACAGAtaaataaaaaggaaagaaaGCTATACATTTAGAAAGAAAGAACAAGAAGTAAccagagagtaagagagaaaaACAAAGCTAGAGACAGTCTATAACAGATAGACATAAAGACAGGATGGCAAACTCAGGATTCCAGTTACTGGGTTACTTCCTGGCATTGGGTGGTTGGATAGGCATCATCTCCACCACGGCTCTGCCCCAGTGGAAGCAGTCTTCGTACGCGGGCGACGCCATCATCACGGCGGTGGGGCTCTATGAGGGCCTGTGGATGAGCTGTGCCTCCCAGAGTACAGGACAGGTGCAGTGCAAGGTGTTTGACTCCATGCTGTCACTGGACGTTCACATCCAGACGTGTCGTGCTCTCATGGTGGTGTCCGTGCTGCTGGGCTTCATAGGAATGATAGTGAGCGTGGTGGGGATGAAGTGCACTAAGGTGGGCGACAATAACCCCGCCTCCAAGGGGCTCATCGCTGTGTCTGGAGGAGCCCTCTTTCTACTCGCAGGTCTGTGCACGCTGGTGTCCGTGTCCTGGTACGCCACTCAGGTGTCCTATCATTTCTTCAACCCAAACACGCCGGTCAATGCCAGGTATGAGTTTGGGTCAGCCCTGTTCGTGGGATGGGCGGCGGCCAGCTTGACGGTTTTGGGTGGATCCTTCCTGTGCTGCTCCTGCTCCAATGAGGAGAGGCGAGGGCAGCAGTACTACCGCCAATCACAACCATCCACAGCCAGGGAACCAAATGTTAAACATTCCCCACCAGAGAAAAAGGAGGAATACTTATAGTTTGGGCGACTCCTTTGGCCCCACGATGTGTTAGATTTTTGGCAACAGGCAAGACACTGTCTAACACAAACAGACAAGACACTCTCTCAAAGAAAATAGAAGCAGACAAGACACTCTCAATAGAAAACATAAGCAGACAAGACACTCTCAATAGAAAACATAAGCAGACAAGACACTTTCAATAGAAAAGACACTTTCAGAAAGCAAACAAAATAAATCCAGAATTCACTGAATACATCTGCAGACCAACCCTAATGGGTAGCTAGTACTGTATCTTTCTTAAAGATGCCCATGTGTTAAATGTTTGTCAATGTATTTTAGAATCAGTTTTGTACACAAGCAATATTAAATGGTATTCTGCACAGGTGTTATTTGTGCTCACACATGACAAATAACTGCTATTTGGATAATTGAAAGCCAGTAAAACTGAATCTATGATTCTTTCTGTCTGTAGTCTGTCTTTAGTTTCTGGGAGAGGAAGTCATTCAGGGTGTGTTTATAGAACATAGAATACAGAAGTGCCCAGATGTTTCTACCACCACCTCCAGCCTTTCTACTACATATTCCCTACTGCAGTGCCTTAtaacatgtgtgtttgtgtgtatgtttttgaCTGTTATACACGGATCCCACAGTGTCACATCCTATATGGACATATGGTAAAACATATCCGTGGACGTCTTTTTCTCTTGCATGAAATGTACCATTCAGACAAACTGTTGCATGTAGTTATATCTCTGAACAtgaatatgtactgtactgtagctagtacACCACTTAgaaaacagcagacagacagattccTAAACGTCCCTAACTGATGGAGAGCGATGGCACGCTTTGTAAAAGTTGTGAGACGGTTTGGAAGAAGTACATGTACAGTAGCCCAGATTGAGGATATTACTATACATGCATTCAATTTAGTTAAGTGCCAATATGATTTAGTGTGGATGGAAGATGTGTTTTGTTATTGACTACGGCAACTTATTCTGTACTCCGGGTGCTGAAAGCACAGTCTCCTGTACAGGTACTGTACTTAGTAACGGCCAGTTTGCTCAATGTAATCAGGTCAAACGTGTTTTTCTGTTGCCTACATTTATTTACCATGCATTTTCTTCATCtaatattcattattattatttcaagTATCATTTCTTTTGAAGTATACTCATGTATGTTTCTTTTAGAATAAAGTAAGAGCATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1686981 lncRNA upstream 76603 64179256 ~ 64180301 (+) True G1475111
TU1686945 lncRNA upstream 149433 64107232 ~ 64107471 (+) True G1475078
TU1686939 lncRNA upstream 160478 64095705 ~ 64096426 (+) True G1475072
TU1686933 lncRNA upstream 164983 64089757 ~ 64091921 (+) True G1475066
TU1686874 lncRNA upstream 276050 63980619 ~ 63980854 (+) True G1475012
TU1687099 lncRNA downstream 92932 64373545 ~ 64379198 (+) True G1475223
TU1687140 lncRNA downstream 161608 64442221 ~ 64442495 (+) True G1475261
TU1687144 lncRNA downstream 169418 64450031 ~ 64450493 (+) True G1475265
TU1687147 lncRNA downstream 177178 64457791 ~ 64458036 (+) True G1475268
TU1687731 lncRNA downstream 214348 64494961 ~ 64495198 (+) True G1475787
XM_036950436.1 mRNA upstream 38227 64210241 ~ 64218677 (+) True p3h1
XM_036950434.1 mRNA upstream 58432 64177667 ~ 64198472 (+) False ap5b1
XM_036950432.1 mRNA upstream 58432 64194586 ~ 64198472 (+) False ap5b1
XM_036950433.1 mRNA upstream 58432 64194656 ~ 64198472 (+) False ap5b1
XM_036950435.1 mRNA upstream 58432 64194662 ~ 64198472 (+) True ap5b1
XM_021569383.2 mRNA downstream 246460 64527073 ~ 64553355 (+) False nucks1a
XM_021569384.2 mRNA downstream 246460 64527073 ~ 64553355 (+) True nucks1a
XM_021569385.2 mRNA downstream 291390 64572003 ~ 64581142 (+) False LOC110494383
XM_021569386.2 mRNA downstream 291390 64572003 ~ 64581142 (+) False LOC110494383
XM_021569389.2 mRNA downstream 301053 64581666 ~ 64590464 (+) False si:ch211-117k10.3
TU1686672 other upstream 568814 63684090 ~ 63688090 (+) True tmcc2
TU1686655 other upstream 593650 63658444 ~ 63663254 (+) True srsf3b
TU1685904 other upstream 1039310 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 1545768 62710339 ~ 62711136 (+) True G1473177
TU1684810 other upstream 1558089 62698503 ~ 62698815 (+) True G1473171
TU1687795 other downstream 282761 64563374 ~ 64565146 (+) True G1475820
TU1687820 other downstream 327641 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 474708 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 474708 64755321 ~ 64780475 (+) False LOC110494389
TU1688642 other downstream 1022804 65303417 ~ 65304128 (+) True G1476510

Expression Profile