RNA id: XM_021569385.2


Basic Information

Item Value
RNA id XM_021569385.2
length 3559
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110494383
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 64572003 ~ 64581346 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caatcaagaCTGGAAATTCCCACCCATGCTTTAAAGCAACATCTGATTTTCaacgttatatccactatcagcAATAAAACAATAGGCTGGGCAGATCTCCTCCTGGAGAATTGATCTGTCTACAGCTACCCTCTGGTTTCCCCATCCAAGGTGTTAACCAAGCCCAGCCCAGGGTCCATGTTTCCATGTGTGGATTTCTCTGGCGATTGGCAGACTTGAGTAAACTACATCAGGCCTCAACAGGCATGACCACAGGACTGGACTCTCTTACCTCCATTGACCCTGCTGCTCTACCTGCGTAAGACCGAAATAGATGGAGCAAGAAAGACAACTCTACCTTTACCTCTGTCTGCCAGTCCAATGTGAGCTCGGACAACTGTATACATGGGGAAGCCGCCCGGTCAGCTATATTGTCTGTTTTCCACTATCTTGAGTAGAGACACTGGAACCTCCTCACAGAAGCATgggacacacacaccagccacacACACCCTGCCACCTTTTCCTCTGCACCACCCACTTGTTTACATGTGCAGGTACCCCAAGGACTTCCCTCTGGAAGAGTCACCCTTAGAACACATGCATAGAGAAGAGCATTCTGTCCTGTCCACACAGTCACTATAAACTCCTGTATCACAGGTGTCTCAGGAACTGTTTGGGAGAGACCAGAGCTTGAGATATAGAGTGGATGTTATAAGTATAGGCAGAGGAAGCAACTTTGAGTCATGCAGGGCCGTGTGTGTCAGCTGTTGCTGGTGAATGCTTTAACCTGTGGTCTGGAGGTGTGTATGGCTGCAGGGACCTTCTACATCCCCCCTCTACTGCTGCAGGCCGGCATGGAGGAACGCTACATGACCATGGTGctggGAGTCGGGCCGGTTCTGGGTTTGATCTTTGTGCCCATGATCGGTTCGTATAGTGACTCGTGGCGTGGTCGTTTTGGTCGGCGCCGGCCATTCATCTGGCTCCTATGTGTGGGGGTTCTGCTGGGCCTGCAGGTCTTGCCCCAGGCTTCTCACCTAGCTGCCCTGCTCTACCCACAGCGCCCCCGATGGCTGGAGGGGATACTGCTGGTGGGGGCAGCCTGTCTGCTGGAGTTCTCAGGACAGGCCTGTTTCACACCGCTGGAAgctctgatctcagaccagttccctggagaggaggagagcagaagaGCCTTTTCTGTCTACTCACTGATGATCAGCCTGGGAGGATGCCTTGGATACCTGCTCCCAGCCCTGGACTGGAGCCATGCCCCCACAGCAGCCTACCTAGGTGGCCAGGAGGCCTTTATCTATGCGTTGATCACCCTCATCTTCCTCACCTGCCTCCTCAGCACAGTCTTCATATCAGAGGACAGATGGACCGGAGGAGAGGGAACCAGGAAAGGCGTTAGCGTTAGTTCCACCCTGAGCCCTTCCCATTGGAGGAGCCGATACTGTGGACACCCCTTGCTATCGCGGACCCAGTGTGTACAGATGGCTGTGGGGTGGTGTGTGTCGCTGTGCGTGTCGGCACTGCCacgtgtgtatggtgtgtgtatgaGCTTGCCGGCAGTGATACGGAGGCTGTTTGTAGCTGAGCTGTTCAGCTGGATGGCTCTGATGAGCTTCATGCTGTTCTATACAGACTTTATGGGAGTGGGGCTGTACCGTGGAGTACCCAACGCTACACCTGGAACACAGGAGAGACTACGATACGACGAAGGTGTACGCATGGCGAGTGTGGGTCTGTTTCTGCAGTGCCTGATCTCAGTGGTCTGCTCCATCCTGATGGAGCGCTGGATGGTGTTGCTAGGCACCCGGGCTGTTTACGTTAGCAGTGTGATCCTGCTAGCGTTAGCTACAGCTGTGATGAGCTTCTCAAAGAGTGTAGTGATGGTCACTGTCATGGCTGCAGCTACTGGATATACCTTCTGTGTGCTGCAGGTCCTGCCCTACACCCTGCTGTGTCTGTACCACTCTGACAAacgggtctttTTCTCCAGCTCCAAATGCAGACCTTCTCACCAAGGAGAAAGTGACGACCACACCAACTCAAAGCCGCTCCTTACCCCCGACCATGGCAAGACCCCGCTTCTCACCTCTGCCTCCCCCCATGTGTCTCTgcccctggagagagagggagaggccatACCCGTGCCTCAGAGAGGGATGTGTCTGGACATGGCTATCCTGGACAGTGCCTACCTGCTCTCCCAGGTGCTGCCTGCTCTGTGTCTGGGATCCATAGTGCAGCAATCCCACAGCGTCAGTGCCTATATGGCCTCCGCTTGCTTCCTTAGCCTCTTGTCCCTGCTCTGCTCCACCGGGGTCGTCTTCACACGCAGCGACCTCCACAAGCTCACAGGGTCAAAGGGCGACACTCCAACGCTGAGGGGGCAAAAGGATTAATCCATTGTGGATTCTAGTTGGTATCTGTGTTCTATTGTAGATTTTTACTGGACTTTGGCAGTCCGTTATAGAGTCCCGTAGCATGAAGAATATGCCGTATGACTCCTCAAAGGGTTGGGGATTGCAGCTCTGACATCAGCACCTCTGAGACAGACAGGTGCTGTGTTGACACAGGTAGAGGTTAACAACACAATCGAAGAGACGGATCATTCTTTCTGCACAtacctttttttttcttccagcCACAGAATCACATTGTGTGCAGTTACTTCTGGGCACATTTCATATAGCTTTGTAGATGTATTTCTCTACTGTTGGTTGGTGTCTCATTCCACTATGGCATTTCTTTATCTGGAATTGTAATGAACTTACGAACCTTATAGTTTCTTATGTTGACATGAAGAACTAGGTAGTCATATGAACAGTGCCAATTGTGTTTTGGATAATACATCAAGTCTTTGTCACCTATCCCTTAACCCAACATGTAAATCTTCTGTTTTCGGTATGCTATGATATCATAATTACTTGAAGAGTGATATGGTATGTATTGATAACGTATGCATTGGGAATGTGGCATTTTATTCCTCGGGGAACTCAGTGCAGGTAAATCAGTTTCTGTTGTAGGCTGCTAGCTAAATGCCTTATTTTTAAACCATGTACTTGAATGTCATAATACATTGTCATCAGGTGGGAAATGTACAGTTATTCCATGTTTTCCTGGCATGGTGTCCTCAGACATGCTTTCGCCTAATGCAAAAATGTGGTAAATATTTTTACAtaatatattgatttgtttttcACGGTTTAAACTGTTTGTAATTGTATCAAGGGAAAGGATTAGTTATTATACAGGGTAATAGctcatttgctccaggggtgccgtactactatggctgaccctgtaagacaacacatttcactgcatgtATCCAgtgttttaaaaataataattgaagGTTAAGTTTACACAGGATAATAGAAGGTTAAGTTGTTACACACGGTAATAGGTTATATGCAAGCATTCTCTCTTTTTTAtgaataaaatattttaaaacatttttcatATGTAATCTAAATGATATGACTTTAACAGTCCTTTGTGTGCAATACAAAGGTTGTATTGCTGCACTCTCCCAAACATCAGAATGGAGGTCTCTAGTTTCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1687782 lncRNA upstream 52831 64518729 ~ 64519172 (+) True G1475807
TU1687743 lncRNA upstream 60736 64510927 ~ 64511267 (+) True G1475799
TU1687731 lncRNA upstream 76805 64494961 ~ 64495198 (+) True G1475787
TU1687147 lncRNA upstream 113967 64457791 ~ 64458036 (+) True G1475268
TU1687144 lncRNA upstream 121510 64450031 ~ 64450493 (+) True G1475265
TU1687806 lncRNA downstream 545 64581687 ~ 64585150 (+) False si:ch211-117k10.3
TU1687805 lncRNA downstream 7944 64589086 ~ 64590850 (+) True si:ch211-117k10.3
TU1687808 lncRNA downstream 12084 64593226 ~ 64593455 (+) True G1475832
TU1687812 lncRNA downstream 16556 64597698 ~ 64597919 (+) True G1475836
TU1687819 lncRNA downstream 37589 64618731 ~ 64629393 (+) False G1475842
XM_021569383.2 mRNA upstream 18648 64527073 ~ 64553355 (+) False nucks1a
XM_021569384.2 mRNA upstream 18648 64527073 ~ 64553355 (+) True nucks1a
XM_036950437.1 mRNA upstream 291390 64256904 ~ 64280613 (+) False cldn19
XM_036950438.1 mRNA upstream 291390 64256904 ~ 64280613 (+) True cldn19
XM_036950436.1 mRNA upstream 353326 64210241 ~ 64218677 (+) True p3h1
XM_021569389.2 mRNA downstream 524 64581666 ~ 64590464 (+) False si:ch211-117k10.3
XM_036950440.1 mRNA downstream 2132 64583274 ~ 64590464 (+) False si:ch211-117k10.3
XM_021569390.2 mRNA downstream 27052 64608194 ~ 64625111 (+) False LOC110494386
XM_021569391.2 mRNA downstream 27052 64608194 ~ 64625111 (+) False LOC110494386
XM_021569392.2 mRNA downstream 27052 64608194 ~ 64625111 (+) False LOC110494386
TU1687795 other upstream 6857 64563374 ~ 64565146 (+) True G1475820
TU1686672 other upstream 883913 63684090 ~ 63688090 (+) True tmcc2
TU1686655 other upstream 908749 63658444 ~ 63663254 (+) True srsf3b
TU1685904 other upstream 1354409 63216948 ~ 63217594 (+) True G1474159
TU1684816 other upstream 1860867 62710339 ~ 62711136 (+) True G1473177
TU1687820 other downstream 27112 64608254 ~ 64622169 (+) True LOC110494386
TU1688055 other downstream 174179 64755321 ~ 64774706 (+) False LOC110494389
TU1688070 other downstream 174179 64755321 ~ 64780475 (+) False LOC110494389
TU1688642 other downstream 722275 65303417 ~ 65304128 (+) True G1476510
TU1688655 other downstream 744735 65325877 ~ 65327163 (+) True G1476520

Expression Profile